Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0214
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0719 + 20388246-20390756,20391159-20391263 31 0.44
01_01_0051 + 389051-389623 29 2.3
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 3.1
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 7.2
03_05_0964 - 29254947-29256183,29256275-29256381 27 7.2
03_05_0758 + 27491778-27492088,27492996-27493113 27 7.2
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 7.2
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 9.5
06_01_0518 + 3750996-3751424 27 9.5
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 27 9.5
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 27 9.5
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -2
Query: 490 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETR 311
RR+ Q+ +D RQN LS++ +F + H + T K++S M G L E
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLS---MQGSLIEEFP 581
Query: 310 TPVPPIASPRGDYSSLRD 257
+ + R Y +LRD
Sbjct: 582 KEIGNLTHLR--YLNLRD 597
>01_01_0051 + 389051-389623
Length = 190
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = -1
Query: 398 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQCDNRK 219
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 218 NRSIPYDISSLKASNS*GS 162
+ S P S+ +S+S GS
Sbjct: 161 SPSPPSSSSTSSSSSSSGS 179
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 152 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 268
Q+ +++C L NW ++ Y H W V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 350 SNAYDRASSFGNTNSSSAHCLTT 282
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 289 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 393
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>03_05_0758 + 27491778-27492088,27492996-27493113
Length = 142
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 346 MHMTGLLRSETRTPVPPIASPRGDYSSLRDRANSTPNNVTIEKIARF 206
+H+ G S + P P +A+PRGD + +T A F
Sbjct: 36 VHLAGGTASSSSAPGPAVATPRGDAAGATTMTATTTTMTAAATTATF 82
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 313 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 489
V E R++ +EK P +P V HR S KK + GR TVD
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364
Query: 490 EGRIVAYPDYSWHEN 534
+G I+ + + WHE+
Sbjct: 365 KGHILQFSGFVWHES 379
>06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 397 HRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRG-DYSSLRDRANSTPNN 233
H + P+ + +I + + R ET + VPP +PR R RA +P++
Sbjct: 872 HPEEELPQDEAEEIFKKLGLDAGFRLETNSVVPPTPAPRSVRPPPSRRRARRSPSS 927
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 356 RFSNAYDRASSFGNTNSSSAHCLTTRRL 273
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 340 MTGLLRSETRTPVPPIASPRGDYSSLRDRANSTPNNVTIEKIARF 206
+T L + T TP PP ++P ++ R S + +E AR+
Sbjct: 29 VTACLATPTPTPPPPTSAPLAPAAAAARRELSAASRAVVEDEARY 73
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 374 PRCRLMSMCNIGQVKNRGYL*QYLVLTKDV 463
P+ R S+CNIG + R L + L++ DV
Sbjct: 400 PKLRDFSLCNIGSIHKRADLAKKLLVLTDV 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,383
Number of Sequences: 37544
Number of extensions: 307321
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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