Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0214
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   5.6  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   5.6  
SB_41477| Best HMM Match : GspL (HMM E-Value=0.15)                     27   7.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)                   27   7.3  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                27   9.7  
SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 379 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 287
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 497 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 339
           RP+S +    T RP+S+    T  R F P    T      STS  T  P + + F + A 
Sbjct: 70  RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129

Query: 338 DRASSFGNTNSSSAHCLTT 282
              S+F  T        TT
Sbjct: 130 PLQSTFTTTARPLQSTFTT 148


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 250  WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 381
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203


>SB_41477| Best HMM Match : GspL (HMM E-Value=0.15)
          Length = 501

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -2

Query: 481 QFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPV 302
           Q Q +Q  L+Q     Q++  F   +   +  +    Q  +    +H+     S+ R   
Sbjct: 365 QLQQTQQQLQQAAQQQQLAQNFQQVFSQVQAHATTSQQTTQQPQELHVVQQ-HSQLRAAQ 423

Query: 301 PPIASPRGDYSSLRDRANSTPNNVTI 224
           P  ASP+G   S+ + A S    VTI
Sbjct: 424 PDGASPQGSQPSVSNNALSNVLTVTI 449


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 406 YVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVP 299
           Y AHR +SAP   ++  +S+  ++  ++  + T  P
Sbjct: 209 YHAHRRRSAPSASIKSSISVKPLSSTVKPNSPTEAP 244


>SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)
          Length = 308

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = -2

Query: 508 RQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQ---SAPRTQVRKIVSLM-- 344
           R+    R  ++Q  Q  LRQ +   Q     Y   V HRH+     PR    K  S +  
Sbjct: 62  REHIKAREEEWQRRQQHLRQEKEDRQRELSQYRHQVLHRHEHMGMEPRRPASKSPSTVEH 121

Query: 343 HMT-GLLRSETRTPV--PPIASPRGD 275
           H    LLR     P   PPI  P GD
Sbjct: 122 HPNHSLLRHPYHLPFHPPPIRQPFGD 147


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = -2

Query: 508  RQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQ---SAPRTQVRKIVSLM-- 344
            R+    R  ++Q  Q  LRQ +   Q     Y   V HRH+     PR    K  S +  
Sbjct: 1147 REHIKAREEEWQRRQQHLRQEKEDRQRELSQYRHQVLHRHEHMGMEPRRPASKSPSTVEH 1206

Query: 343  HMT-GLLRSETRTPV--PPIASPRGD 275
            H    LLR     P   PPI  P GD
Sbjct: 1207 HPNHSLLRHPYHLPFHPPPIRQPFGD 1232


>SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 263 PRPGQQHAKQCDNRKNRSIPYDISSLKASNS*GSY 159
           P  GQ +  QC  R  + +PY I   +A+   GSY
Sbjct: 54  PGCGQFYCLQCALRMLKEVPYTIEESEAAAGMGSY 88


>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 484 LQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTP 305
           + ++ S D++      S ++A F L Y  HR + A       ++S+  M  +  ++  + 
Sbjct: 80  IAYKSSSDLVTAAGGSSVLAAAFGLLYCKHRQRHARTQSEEDLLSMELMYSMQAADGLSE 139

Query: 304 VPPIA 290
           +PP A
Sbjct: 140 IPPPA 144


>SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 68  NN*DGCPNRETSQHCCLVPNSC 3
           NN +  P+R+  +HC + PN C
Sbjct: 131 NNNEDAPDRDELEHCEISPNRC 152


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 455 SSKRGIVTNIRDFLPDLCCTSTSIGT 378
           +++RGI  NIR F+ ++C T+ ++ T
Sbjct: 27  TNERGIWQNIRRFVVEICVTTMNLAT 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,570
Number of Sequences: 59808
Number of extensions: 360394
Number of successful extensions: 1086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)