Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0214
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23390.1 68417.m03372 expressed protein   contains Pfam profi...    29   1.5  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    29   1.5  
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b...    28   3.4  
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4...    28   4.5  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    27   6.0  
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss...    27   7.9  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    27   7.9  
At2g38590.1 68415.m04740 F-box family protein contains Pfam prof...    27   7.9  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    27   7.9  

>At4g23390.1 68417.m03372 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 401

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 233 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 346
           IV+  +   ++  + + W  +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 500 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 387
           +R SSS  P+ +G PS+K       +V NI    P  CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417


>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
           boundaries domain protein 18 (LBD18) identical to LOB
           DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
           by full-length cDNA gi:17227163
          Length = 262

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 380 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 258
           T+ P + +   + YD AS F  T SSSA   T +R F  PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209


>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
           HD-ZIP protein 4 identical to  Homeobox-leucine zipper
           protein ATHB-4 (HD-ZIP protein ATHB-4)  (SP:P92953)
           [Arabidopsis thaliana]
          Length = 318

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 503 TIRPSSSTVPNVTGRPSSKR 444
           T  PS++T P V GRPS +R
Sbjct: 284 TAAPSTTTTPTVVGRPSPQR 303


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 491 SSSTVPNVTGRPSSKRGIVTNIRDFLP 411
           +++T P  T +P  K+GI+  I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177


>At5g26680.1 68418.m03171 endonuclease, putative similar to
           Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
           1) (MF1) [Homo sapiens]
          Length = 453

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 169 QLLDAFKLEMSYGIERFFLLSHCLAC-CWPGLGAKNNLRVVRQWAELEFVFPNEEARSYA 345
           ++L+  +L M   I+   +LS C  C    G+G +  L+++RQ   +E +  N     Y 
Sbjct: 212 KILEELQLTMDQFID-LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQ 270

Query: 346 LEKRF 360
           + + +
Sbjct: 271 IPEEW 275


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 290 GNGRNWSSCFRTKKPGHM 343
           G GR  S C++  +PGHM
Sbjct: 123 GGGRGGSDCYKCGEPGHM 140


>At2g38590.1 68415.m04740 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 424

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 504 NDTSLVVYSSKCHRTSFVKTRYCHK 430
           +DT +VV++  C +T +++ RY H+
Sbjct: 127 DDTRVVVWNPYCGQTRWIQLRYSHR 151


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 397 VQHRSGKKSRIFVTIPR-FDEGRPVTFGTVDDEGRI 501
           V   S +KS   +T+P    EGRP+ +   D+EG +
Sbjct: 176 VSRTSSEKSEEELTVPPPKSEGRPIYYHIADEEGHV 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,458
Number of Sequences: 28952
Number of extensions: 246925
Number of successful extensions: 635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)