Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0213
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                  232   1e-61
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         81   6e-16
SB_4881| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          28   5.6  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score =  232 bits (568), Expect = 1e-61
 Identities = 103/146 (70%), Positives = 126/146 (86%)
 Frame = +1

Query: 103 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 282
           MSI+ YNG A++AM G++CVAIA D+R GIQAQTVS +F K+FQMG  L+VGLPGLATD 
Sbjct: 71  MSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDV 130

Query: 283 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 462
           QT+  RLKFR+NLYEL+E R ++PKTF +M+SNLLYERRFGPYF+EPVIAGLDP  N+P+
Sbjct: 131 QTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPF 190

Query: 463 VCNMDLIGCPNEPEDFVVSGTCSEQL 540
           + +MDLIGCP E +DFVVSGTCSEQ+
Sbjct: 191 ISSMDLIGCPMETKDFVVSGTCSEQM 216


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 48/148 (32%), Positives = 77/148 (52%)
 Frame = +1

Query: 97  TNMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 276
           T  S  A+NGG V+A+ G+D   IA+D R     Q  + + PKV+++  +  +G  G   
Sbjct: 78  TYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHG 137

Query: 277 DTQTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQ 456
           D  T+ + +  R+ +YE    + M     + MLS +LY RRF PY+   ++AGLD  + +
Sbjct: 138 DCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDS-EGK 196

Query: 457 PYVCNMDLIGCPNEPEDFVVSGTCSEQL 540
             V + D +G   E E +   G+ S  L
Sbjct: 197 GCVFSFDPVG-SYEREVYRAGGSASALL 223


>SB_4881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 34  NILS*SLYSNSKSRRCLSFYITNMSILAYNGGAVVAMKGQDCVAIATD-KRFGIQAQTVS 210
           N++  SLY  + +   L    +  S ++ NGG+ +A+ GQ  + +  D K+F +  + V 
Sbjct: 204 NVVPLSLYKKATNDIVLRNVKSTKSTISANGGSKLALIGQVIIPVWRDTKKFKLDCKLVD 263

Query: 211 TN 216
            N
Sbjct: 264 KN 265


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 171  YGQAVWYTSSNSINQLPKSIPNGTHIVCRPSRSRD*HPNCI 293
            YGQ VWY    +  +  ++ P    +VC  S  RD    C+
Sbjct: 1547 YGQCVWYYDGRTQCECRRTCPRSDQLVC-GSDDRDYANECV 1586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,958
Number of Sequences: 59808
Number of extensions: 378176
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)