Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0213
         (540 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    26   0.93 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.5  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   8.7  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 25.8 bits (54), Expect = 0.93
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 395 RSYNKFDNIAENVLGRIILFSFN 327
           RS+ KF  +AE+V GR +L +F+
Sbjct: 82  RSFRKFKLVAESVNGRDVLTNFH 104


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 519  RYHKIFRFIWATNQVHVTDIRLVIIG 442
            +YHKI R   A   ++   +R  I+G
Sbjct: 1356 KYHKILRHAGAQLMINTMQLRFWIVG 1381


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 403 GPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPE-DF--VVSGTCSEQ 537
           GP    PV+  + P    P V  MD+     +P  +F  +VS  C+E+
Sbjct: 743 GPSSSPPVMESIPPPPKPPTVTMMDMQQLDTQPTLEFKELVSQKCAER 790


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,537
Number of Sequences: 2352
Number of extensions: 12854
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)