Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0212
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.029
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.47 
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   4.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.4  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 313 DGQETHSLIQHIYL*QGIRQE-AFRLRHSKDNINNKFMFHHLDLHTSDRRYKQASVMVDA 489
           DG+E       +Y   G+    A ++ HS  + N K    H+  HT + +Y    ++ D 
Sbjct: 169 DGKELKRRDDEVYTSTGLASAWAEKMLHSIKDFNQKTTVFHM--HTRNNKYDTREIVDDI 226

Query: 490 AVGGAGYRFGNRLAD 534
             GG G+    ++AD
Sbjct: 227 FFGGTGWAEPPKIAD 241


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 301 DCGYRKYDAEDSSDQGPGPSRSTAAAFL 218
           D G+ KYD  + SD+GP  ++S A + L
Sbjct: 549 DTGFSKYDRLEESDKGPMTAKSLAKSVL 576


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 289 DSHNHIDMDGQETHSLIQHIYL*QGIRQEAFRLRHSKDNINNKFMFHHLD 438
           D+   +D     T SLI+++ L  G R+EA +L  ++     K    HLD
Sbjct: 26  DAIKDVDEASDHTISLIRNLLLDAGAREEAVQLIQNELEKQFKEREEHLD 75


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 208  EASSEMLLLCFYSDRVPDHCYPRHHTFDSHNHID 309
            EAS     + F++D V +  YPRH   DSH  +D
Sbjct: 1967 EASVSTPEVRFHADEVSN--YPRHVPTDSHGSLD 1998


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,580
Number of Sequences: 5004
Number of extensions: 37756
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)