Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0212
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protei...    29   3.0  
AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-...    29   3.0  
U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine rece...    28   4.0  

>U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protein 9
           protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 385 LRHSKDNINNKFMFHHLDLHTSDRRYKQASVMVDAAVGGAGYRFGNRLADQYPSH 549
           ++H KD + N     ++ LH + R  KQ  V ++A +  A   +GN ++   P H
Sbjct: 32  VKHKKDFVVNLISGGNIALHVNFRFEKQKIVAINAKIDNA---WGNEISHANPLH 83


>AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-9
           protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 385 LRHSKDNINNKFMFHHLDLHTSDRRYKQASVMVDAAVGGAGYRFGNRLADQYPSH 549
           ++H KD + N     ++ LH + R  KQ  V ++A +  A   +GN ++   P H
Sbjct: 32  VKHKKDFVVNLISGGNIALHVNFRFEKQKIVAINAKIDNA---WGNEISHANPLH 83


>U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine
           receptor, class u protein48 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  SIACIYYCVHTTFRTELCKLLIVNKIN*TYKQVL 131
           SI  I+Y  H  FR ++ K+ + N I  TY+  L
Sbjct: 296 SIPIIFYLTHPLFRKKIQKVYVANVIPSTYRSNL 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,795,504
Number of Sequences: 27780
Number of extensions: 217437
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)