Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0211
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    29   0.47 
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    29   0.47 
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    29   0.47 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.5  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   4.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   4.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   4.4  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   5.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.7  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 286 VLRNHTQRLQQDISTVRVYIFYRAHGYIIGVARLLLH 396
           + + HT RL++  + +R   F   HGYI GV + ++H
Sbjct: 14  IFQAHT-RLRKGAAQLRTLDFAERHGYIRGVVQKIIH 49


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 286 VLRNHTQRLQQDISTVRVYIFYRAHGYIIGVARLLLH 396
           + + HT RL++  + +R   F   HGYI GV + ++H
Sbjct: 14  IFQAHT-RLRKGAAQLRTLDFAERHGYIRGVVQKIIH 49


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 286 VLRNHTQRLQQDISTVRVYIFYRAHGYIIGVARLLLH 396
           + + HT RL++  + +R   F   HGYI GV + ++H
Sbjct: 14  IFQAHT-RLRKGAAQLRTLDFAERHGYIRGVVQKIIH 49


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   STTAPNEPLPQEPWIALIRRGSCNFELKVQNAWRANATAVL-IYNDRDAPDLDKMKLSTD 178
           ++T P+EP P       I+  +     ++ N W  + T    ++N       D  +   D
Sbjct: 407 ASTTPSEPPPSS-----IKHKTLQ---EILNKWSTDLTTQTEVFNKLCDQVSDWDRTLVD 458

Query: 179 NGRNISAVFTYKWKGEEIARLIDNG 253
           NG  IS ++T   + E+++  ID+G
Sbjct: 459 NGALISKLYTETVEAEQMSNRIDDG 483


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 233 LSLLPSTCT*TRHLYYVRYP 174
           +SLL ST    RHLY  RYP
Sbjct: 14  VSLLSSTNAAPRHLYVKRYP 33


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +2

Query: 146 PDLDKMKLSTDNGRNISAVFTYKWKGEEIARLIDNGTRVTIAIIKGRSFAIIPKDFNKTS 325
           P  +++    + G+ I     + WK  +   + D    +T +   G  F +I KD+    
Sbjct: 350 PGKNELSFGVNGGKAICTANLFFWKHNDPVVISDIDGTITKSDALGHMFTLIGKDWTHAG 409

Query: 326 V 328
           V
Sbjct: 410 V 410


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 147 GASRS-LYIRTAVALARHAFC 88
           GA RS LYI    A+ RHAFC
Sbjct: 4   GAWRSILYIAFLFAITRHAFC 24


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
 Frame = -3

Query: 318 LLKSLGMIAKDLPLIIAMVTLVPLSMRRAISSPFHLYVNTALILRPLSVDSF--ILSRS- 148
           L+ S+ + A D  +I    T +P  +        + ++ TA  L   S+  F  I+S   
Sbjct: 96  LMLSIFLAALDQTVI---TTAIPTIVANLDGGSSYSWIGTAYSLAETSILPFCGIMSEVV 152

Query: 147 GASRSLYIRTAVALARHAFCTFSSKLQLPRLMRAIQGS*GKGSLGAV 7
           G    LY    + L   A C  +  +    L RA+QG  G G +  V
Sbjct: 153 GRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGIMSLV 199


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
 Frame = +2

Query: 23  PLPQEPWIALIRRGSCNFEL---------KVQNAWRANATAVLIYNDRDAPDLDKMKLST 175
           P P   WI+ IR   CN            K  +    N     IY   D P +   +L+T
Sbjct: 336 PYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYKPLDHPQVSIPRLAT 395

Query: 176 DNGRNISAVFTYKWKGEE 229
                +  +  + W   +
Sbjct: 396 AEDAGMRRLMGHSWDNSD 413


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 295 NHTQRLQQDIST 330
           +HTQRLQQ IST
Sbjct: 753 SHTQRLQQSIST 764


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 341  ISFIVLMVISLAWLVF 388
            IS IVL++ SLAW +F
Sbjct: 1445 ISIIVLVLTSLAWFLF 1460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,402
Number of Sequences: 5004
Number of extensions: 37958
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)