Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0211
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                    142   1e-34
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  31   0.48 
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)                    30   1.1  
SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30)                 29   1.9  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   29   2.6  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)                   28   3.4  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   28   3.4  
SB_17664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_28329| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)                       27   7.8  
SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score =  142 bits (344), Expect = 1e-34
 Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
 Frame = +2

Query: 38  PWIALIRRGSCNFELKVQNAWRANATAVLIYNDRDAPDLDKMKLSTDNGRNISAVFTYKW 217
           PWIAL+RRGSC F  K+ NA++ NATA++IY+ +D+ D+  + +      N+ +V   K 
Sbjct: 116 PWIALVRRGSCRFNTKIANAFKYNATAIIIYDSQDSDDV--ITMLNAGAPNLVSVSITKR 173

Query: 218 KGEEIARLIDNGTRVTIA-IIKGRSFAIIPKDFNKTSVLFVSISFIVLMVISLAWLVFYY 394
            GE +A  + N +R   A I+ G   +      N TSVLFVS+SFIVLMVISLAWLVFYY
Sbjct: 174 LGEYLADKLRNNSRAIYAEILVGEKHS--KWRVNPTSVLFVSVSFIVLMVISLAWLVFYY 231

Query: 395 IQRFRYIHAKDRLSKRLCCAAKKAL 469
           +QRFRY+HA+D+  KRL  AAKKA+
Sbjct: 232 VQRFRYVHARDKTEKRLSSAAKKAI 256


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 NKTSVLFVSISFIVLMVISLAWLVFYYIQRFRYIH 418
           +K  +LF+S SF+ L  ++ A L   Y  +F Y++
Sbjct: 248 HKNKILFISSSFVQLTTVTRAMLALMYPLKFSYVY 282


>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
          Length = 770

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 248 NGTRVTIAIIKGRSFAIIPKDFNKTSVLFVSISFIVLMVIS---LAWLVFYYIQRFRYIH 418
           N + + + +    +  ++PKD +  S   V +  I L  IS    A+ V Y I+R R+IH
Sbjct: 542 NSSMIYLTVANVSAVGLLPKDSSNFSFAGV-LGVIALCSISSCIAAFAVRYLIRRKRFIH 600

Query: 419 AKDRLSKR 442
            K  +S +
Sbjct: 601 LKGSISSK 608


>SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30)
          Length = 308

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 326 VLFVSISFIVLMVISLAWLVFYYIQRFRYIHAKDRLSK 439
           +++  ISF ++++I L  +   YI  FRYI   +R S+
Sbjct: 166 IIYDIISFGIVVIIPLIIITIIYIAIFRYIRQHNRKSR 203


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 290 FAIIPKDFNKTSVLFVSISFIVLMVISLAWLVFYYIQRFRYIHAKDRLSKRLCCAAK 460
           F++ PKD++ T V+F    F  +  ++ +++  + I R    +A     K+    AK
Sbjct: 389 FSVGPKDYSYTVVIFTKFYFFPIAFMTFSYVHVFVITRRMAKNATQLWGKKAAATAK 445


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 313 EVFGYDCEGPPFDYSDGDSGA-VVNETRYLFSLPLVREHGTYITSVIRG 170
           E+ G+ C G   +YSDG S   V  ++  L +   +  H  Y+ + I G
Sbjct: 166 EILGFSCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFG 214


>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
          Length = 382

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 283 PFDYSDGDSGA--VVNETRYLFSLPLVREHGTYITSVIR 173
           P DY+D  S A  + + T+ + SLP   EH ++  S IR
Sbjct: 182 PEDYADSTSRATGLKSRTKTIESLPRASEHSSFYMSTIR 220


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311  FNKTSVLFVSISFIVLMVISLAWLVFYYIQRFRYI-HAKDRLS 436
            F + +VL + +  ++ + I L W  +YY+ RF+    AK+RL+
Sbjct: 2441 FYRDAVLSMGVLLLLAVCIGLVW-NYYYVNRFKKADDAKERLT 2482


>SB_17664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 239 LIDNGTRVTIAIIKGRSFAIIPKDFNKTSVLFVSISFIVLMVISLAWLVFYYIQR 403
           ++ N T + + + K     ++PK      VL +S + +V +V+++ W +  Y+ R
Sbjct: 45  IVSNATVIVLVLAK-----MVPKKTTNLFVLNMSAADLVTLVLNIPWALMVYLTR 94


>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 286 VLRNHTQRLQQDISTVRVYIFYRAHGYIIGVARLLLH 396
           +  +HT+  ++  + +RV+ +   HGYI GV + ++H
Sbjct: 15  IFTSHTKH-RKGAANLRVHDYAERHGYIKGVVKEIIH 50


>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 226 FSLPLVREHGTYITSVIRGQLHFVEIWSI 140
           + LP+  +HG Y T ++RG+ H  + +SI
Sbjct: 697 YILPVPMKHGGYDTGILRGRRHGRQRYSI 725


>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 222 PFHLYVNTALILRPLSVDSFILSRSGASRSLYIRTA 115
           P ++Y+ T+      SVDS I+S S   R +YI T+
Sbjct: 289 PRYMYITTSSSKHTRSVDSAIMSWSRDPRYMYITTS 324


>SB_28329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = -3

Query: 318 LLKSLGMIAKDLPLIIAMVTLVPLSMRRAISSPFHLYV-NTAL-------ILRPLSVDSF 163
           +L S+  IA +L +++A+V    +   + + SPF+  V N AL       I+ P+SVD +
Sbjct: 27  MLLSISAIAGNLLVVLAVV----IDPNKNLQSPFNFLVANLALADFMVGIIVEPMSVDFY 82

Query: 162 ILSRSGASRSLYIRTAVALARHAFCTFS 79
           I    G   S   R    +     CT S
Sbjct: 83  IREGFGIPESDVKRNTRRICYFISCTAS 110


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 44   IALIRRGSCNFELKVQNAWRANATAVLIYNDRDAPDLDKM 163
            IAL+ RG C+F  K +   +  A AVLI  D  A +++ M
Sbjct: 1051 IALVERGGCSFVSKSKMVEQFGAVAVLI-ADNAADNVNTM 1089


>SB_7440| Best HMM Match : fn3 (HMM E-Value=0.35)
          Length = 602

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -3

Query: 372 NDITMSTIKDIDTNSTDVLLKSLGMIAKDLPLIIAMVTLVPLSMRRAISSPFHLY 208
           ND     I   +T ++  L+K  G  +KDL  IIA+ TLVP+S+  AI    + Y
Sbjct: 281 NDFDCGGISSCETPASLNLIKEPGE-SKDL--IIAVGTLVPISIIVAIGVGVYYY 332


>SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 283 EVLRNHTQRLQQDISTVR-VYIFYRAHGYIIGV-ARLLLHTTFP 408
           E+++N +QRLQ D+S+   + +F  A   I+   +R+LL T  P
Sbjct: 68  ELVQNRSQRLQFDVSSPNGILLFREASKMIVAYGSRILLLTDTP 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,681
Number of Sequences: 59808
Number of extensions: 303905
Number of successful extensions: 809
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)