Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0211
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   1.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 353 VLMVISLAWLVFYYIQRFR 409
           V  ++ LAW +FY+    R
Sbjct: 75  VYYIVILAWAIFYFFMSMR 93


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 219 FHLYVNTA 196
           FHLY+NTA
Sbjct: 363 FHLYINTA 370


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 212 KWKGEEIARLIDNG 253
           K++GEEIA L D G
Sbjct: 77  KFRGEEIAILYDPG 90


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 353 VLMVISLAWLVFYYIQRFR 409
           +  +I LAW +FY +   R
Sbjct: 113 IYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 353 VLMVISLAWLVFYYIQRFR 409
           +  +I LAW +FY +   R
Sbjct: 166 IYYIIILAWALFYLLVSLR 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,602
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)