Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0210
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 299 2e-82
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 31 0.16
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 28 0.86
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 1.5
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 2.0
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 2.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.6
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 3.5
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 3.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.5
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 26 4.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 4.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 8.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 8.0
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 8.0
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 299 bits (734), Expect = 2e-82
Identities = 134/170 (78%), Positives = 155/170 (91%)
Frame = +3
Query: 69 LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 248
LNKTKPIWTRN ++T++EY FYKSLTNDWEDHLAVKHFSVEGQLEFRA+LFVPRRAP
Sbjct: 265 LNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRAPM 324
Query: 249 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKIL 428
DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSEDLPLN+SREMLQQNKI+
Sbjct: 325 DLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLPLNLSREMLQQNKIM 384
Query: 429 KVIRKNLVKKCL*LFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKL 578
KVIRKNLV++CL +F E+AEDKEN+K +Y+ FSKNLKLGIHED+ NR L
Sbjct: 385 KVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSKNLKLGIHEDAANRPAL 434
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 30.7 bits (66), Expect = 0.16
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 96 RNADDITQDEYGDFYKSLTN-DWEDHLAVKHFSVEG-QLEFRALLFVPRRAPFDLFENKK 269
R AD+ T+D ++L++ + +A+ F +E F + + +A L ++K
Sbjct: 212 RLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISLRNKAIQHLLKSKI 271
Query: 270 RKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNL 449
N K FI++ + P + F R VVD D + + KIL ++ N+
Sbjct: 272 AANTDKAINCIEFILEAPPSMQPRLIQFTRWVVDKADPNFLKPKAAMILEKILSILSSNI 331
Query: 450 VKKCL 464
++ L
Sbjct: 332 IQSDL 336
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 28.3 bits (60), Expect = 0.86
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 181 NTSPLKVS*SSVHYFLCHVVHLLTCLKTRS--ARTISSCMYEEFSSWTTVRISSQSTLTS 354
NTSPLK + S+ F+ V L LKT++ R+I + S TT + S + +
Sbjct: 514 NTSPLKYTHSASKSFIGEVQDSLQALKTKAHKPRSIGGDSSQTTLSETTKKYGSVAKKSF 573
Query: 355 LEVLSTVRTFL 387
+ +S ++F+
Sbjct: 574 FQGVSDAKSFV 584
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 96 RNAD-DITQDEYGDFYKSLTNDWEDHLA 176
+NAD IT+D + D YK LT + +D A
Sbjct: 60 QNADLSITKDNFRDVYKKLTENEDDSFA 87
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 RRRRRKQLKKNTQRMKNSTRR-SLSGPETLMTLPKMSMETSTNPLP 153
RRR +++ QRM RR S + T M+ P S+ T T+P P
Sbjct: 429 RRRNHTEIRLAEQRMNEERRRLSAAATATPMSAPT-SVLTGTSPQP 473
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 399 REMLQQNKILKVIRKNLVKKCL*LFEELAEDKENYKKYYEQFSKNLKLGIHE 554
RE L ++ + + L ++C L + E K YE F N GIH+
Sbjct: 610 REQLHVSETQRTLFLELRQRCKNLMTSIEEQKSELSNLYESFDPN---GIHD 658
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +3
Query: 156 DWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLI 335
D LAVK + G L L + DL N+K +K ++ ++ +++ DL+
Sbjct: 939 DLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLL 998
Query: 336 PEYLNFIRGVVD 371
P N +R V++
Sbjct: 999 PLTKNVLRLVLN 1010
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +3
Query: 252 LFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILK 431
++E KN + ++ F D + +Y N+I + + +LP +L Q I
Sbjct: 108 IYEQISEKNRLFYLIKTKFKDDMISGTLEDYDNYIEVLKEKLELPSCFQAILLVQKHIRF 167
Query: 432 VIRKNLVKKCL*LFEE---LAEDKENYKKYYEQFSKNL 536
++ + + L ++ E + +Y+ Q +KN+
Sbjct: 168 LLTQMVATSSLHVWSESPFFIRIRSSYEHLILQINKNI 205
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 304 FSSWTTVRISSQSTLTSLEVLSTVRTFL 387
F+++ +++ S QS L E LSTV TFL
Sbjct: 181 FTAYNSIKQSLQSRLPPDEKLSTVTTFL 208
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 82 SLSGPETLMTLPKMSMETSTNPLPMIGRTILQSNTSPLKVS*SSVHYFLCHVVHLLTCLK 261
SLS + + ++ +S++ L + + S++SP+ S S V + + ++
Sbjct: 662 SLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSL 721
Query: 262 TRSARTISSCMYEEFSSWTTVRISSQSTLTS 354
+ +A + SS + +S T + SS +TL S
Sbjct: 722 SLTAMSSSSAIPTSVNSSTLITASSSNTLLS 752
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 336 PEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCL*LFEELAEDKENYKKYY 515
P YLN + S PL++ + + + + ++NLV CL + + +D N +
Sbjct: 442 PRYLNLLG---QSGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISVDDTSNIPEII 498
Query: 516 EQFSKNLK 539
+ S+ LK
Sbjct: 499 ARLSEKLK 506
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 366 VDSEDLPLNISREMLQQNKILKVIRKNLVKK 458
++SED+PL+ R+ML++ + RK L+K+
Sbjct: 87 INSEDMPLSDDRDMLKERHVKS--RKLLLKE 115
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 252 LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 359
L EN KNN+ L ++ I++ CE +I + LNF++
Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 82 SLSGPETLMTLPKMSMETSTNPLPMIGRTILQSNTSPLKVS*SS 213
SLS P T T+P S +++ P+P + +N+SPL + +S
Sbjct: 186 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 228
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 82 SLSGPETLMTLPKMSMETSTNPLPMIGRTILQSNTSPLKVS*SS 213
SLS P T T+P S +++ P+P + +N+SPL + +S
Sbjct: 242 SLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 84 PIWTRNADDITQDEYGDFYKSLTNDWE 164
P+W AD + Q+ D + + DW+
Sbjct: 1123 PVWNEEADIVVQNRVLDVLELVCYDWD 1149
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 31 RKQLKKNTQRMKNSTR 78
RK+LKKN QR+ N +R
Sbjct: 569 RKKLKKNKQRLGNQSR 584
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 264 KKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 398
KKR+ + Y RR F ++ E I Y N V+ + +PL+I+
Sbjct: 158 KKRRKKGQGYARRYFTLNMVEGTISYYANENSSVMRGK-IPLSIA 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,357
Number of Sequences: 5004
Number of extensions: 42496
Number of successful extensions: 166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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