Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0210
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      325   2e-89
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      193   8e-50
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    87   1e-17
SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)                   31   0.90 
SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     30   1.6  
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)                      30   1.6  
SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)               29   2.1  
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)           29   2.1  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   6.3  
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                27   8.4  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  325 bits (798), Expect = 2e-89
 Identities = 148/170 (87%), Positives = 163/170 (95%)
 Frame = +3

Query: 69  LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 248
           LNKTKPIW RNAD+IT +EYG+FYKSLTNDWE+HLAVKHFSVEGQLEFRALLFVP+RAPF
Sbjct: 221 LNKTKPIWMRNADEITTEEYGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPKRAPF 280

Query: 249 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKIL 428
           DLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL FI+GVVDSEDLPLNISREMLQQNKIL
Sbjct: 281 DLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLGFIKGVVDSEDLPLNISREMLQQNKIL 340

Query: 429 KVIRKNLVKKCL*LFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKL 578
           KVIRKNLVKKC+ LF E+AED++NYKK+YEQF KNLKLGIHEDS NRAKL
Sbjct: 341 KVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGKNLKLGIHEDSVNRAKL 390


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  193 bits (471), Expect = 8e-50
 Identities = 93/172 (54%), Positives = 130/172 (75%), Gaps = 2/172 (1%)
 Frame = +3

Query: 69  LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 248
           LN  KPIWTR   +I  DEY +FYKS T + ED LA  HF  EG++ FR++LFVP+ AP 
Sbjct: 321 LNTNKPIWTRKPKEIKDDEYNEFYKSFTKESEDPLAKIHFVAEGEVTFRSILFVPKAAPS 380

Query: 249 DLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKI 425
           +LF +  K+ + IKL+VRRVFI DN E+++P+YL+FIRGVVDS+DLPLN+SRE LQQ+K+
Sbjct: 381 NLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLSFIRGVVDSDDLPLNVSREQLQQHKL 440

Query: 426 LKVIRKNLVKKCL*LFEELAEDKENY-KKYYEQFSKNLKLGIHEDSQNRAKL 578
           LKVI+K LV+K L + +++   KE+Y   +++++S N+KLG+ ED  NR +L
Sbjct: 441 LKVIKKKLVRKALDMIKKI--PKEDYMATFWKEYSTNIKLGVIEDHSNRTRL 490


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/110 (33%), Positives = 65/110 (59%)
 Frame = +3

Query: 69  LNKTKPIWTRNADDITQDEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 248
           +N  +P+WT    DI+++++ +FY+ L+  ++      H+  +  L  R++ + P   P 
Sbjct: 270 INTIQPLWTLEPRDISKEQHDEFYQFLSKGYDKPRYYLHYKTDAPLNIRSIFYFPETLP- 328

Query: 249 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 398
            +F  ++ ++ I LY RRV I    E ++P+   FIR VVDSED+PLN+S
Sbjct: 329 QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRSVVDSEDIPLNLS 378



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
 Frame = +3

Query: 330 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCL*LFEELA-EDKENYK 506
           ++P +L FIRGVVDSED+PLN+SRE+LQ + ++K +   L  + +   +E A +D+  Y+
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIKKLSNVLSARLVKFLQEQARKDRVKYE 458

Query: 507 KYYEQFSKNLKLGI--HEDSQNRAKL 578
           K+++     ++ G+   ED + + ++
Sbjct: 459 KFFKDCGIFIREGVVTTEDEEQKEEI 484


>SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)
          Length = 465

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +1

Query: 7   EFGTRRRRRKQLKKNTQRMKNSTRRSLSGPETLMTLPKMSMETSTNPLPMIGRTILQS 180
           +F T R+R + L  + +R+  S R S+SGP   +T   M++  +   +P +G  + +S
Sbjct: 51  DFTTFRKRSQALNNSIRRITPSARASISGPFEKLT--GMTLAEAQTKVPSLGLQLKKS 106


>SB_3632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 139 TNPLPMIGRTILQSNTSPLKVS*SSVH-YFLCHVV--HLLTCLKTRSARTISSCMYEEFS 309
           TN    +GR +     S    + S++H +FL  ++    ++ L  R+ R +++C+Y   S
Sbjct: 53  TNLSRRVGRRVTFRVLSTTDYALSTIHRFFLIKLIVSGYISLLIGRNRRVLAACVYTNLS 112

Query: 310 SWTTVRISSQSTLTSLEVLSTVRTFL 387
                R++ +   T+   LST+  FL
Sbjct: 113 RRVGRRVTFRVLSTTDYALSTIHRFL 138



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 139 TNPLPMIGRTILQSNTSPLKVS*SSVHYFLCH---VVHLLTCLKTRSARTISSCMYEEFS 309
           TN    +GR +     S    + S++H FL     V   ++ L  R+ R +++C+Y   S
Sbjct: 109 TNLSRRVGRRVTFRVLSTTDYALSTIHRFLLIKLIVSGYISLLIGRNRRVLAACVYTNLS 168

Query: 310 SWTTVRISSQSTLTSLEVLSTVRTFL 387
                R++ +   T    LST+  FL
Sbjct: 169 RRVGRRVTFRVLSTKDYALSTIHRFL 194


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 160 GRTILQS-NTSPLKVS*SSVHYFLCHVVHLLTCLKTRSARTIS 285
           G   LQS +T P+ +   SV+  LC  + ++TC +TR A + S
Sbjct: 102 GHAYLQSRDTCPVHLVLISVNLLLCITILMVTCARTRQAGSTS 144


>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
          Length = 269

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 351 FIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCL*LFEELAEDKENYKKYYEQFSK 530
           F    +++ D+ L + R +  +N+IL+     L ++C  LFEE+   KE+ ++  E+  K
Sbjct: 10  FTDETLNARDIQLQLER-VKAKNEILERDNGKLEERCDELFEEIVRMKESQREVEEEQEK 68

Query: 531 NLK 539
             K
Sbjct: 69  LFK 71


>SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)
          Length = 501

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 390 NISREMLQQN-KILKVIRKNLVKKCL*LF-EELAEDKENYKKYYEQFSK 530
           N + +ML+Q  K  K  R N  K  L +F EEL ++   YK+ Y QF +
Sbjct: 416 NSNLDMLRQRMKAKKEERTNAAKSNLTVFVEELTKEYNKYKESYSQFQQ 464


>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 96  RNADDITQDEYGDFYKSLTNDWEDHLAVK----HFSVEGQL 206
           RN DD T   +GD+ K   ND   HL  K    H+ VEG +
Sbjct: 279 RNTDDDTDVWFGDWEKGQINDILSHLGNKVKSSHYIVEGTI 319


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 22  RRRRKQLKKNTQRMKNSTRRSLSGPETLMTLPKMSMETSTNPLP 153
           +++RK+  ++ +R    +R S  G E    LP  SME   +P P
Sbjct: 111 KKKRKRRVESEERSPFKSRHSKKGKERKGELPGRSMEEERSPEP 154


>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 273 KNNIKLYVRRVFIMDNCEDLIPEYLNFIR-GVVDSEDLPLNISREMLQ 413
           +N  ++Y   +  M+N  DL+ +    +   V D +DLP N S+++ +
Sbjct: 199 ENGPRVYTLNISAMNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYE 246


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 279  NIKLYVRRVFIMDN---CEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNL 449
            N KL V+++ + +    CE L+ E     +   + +++ +   +E+ +QNK++ V+ K  
Sbjct: 1142 NEKLAVQKIAVTEKSEACEKLLVEIQRATQQANEKKEMAIGKKKEIAEQNKVI-VVEKTE 1200

Query: 450  VKKCL 464
             ++ L
Sbjct: 1201 AEEAL 1205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,574
Number of Sequences: 59808
Number of extensions: 318528
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)