Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0210
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.033
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -3

Query: 425 NFILLKHLT*NV*RKVLTVDNTSNEVKVLWDEILTVVHDENSSYIQLDIV 276
           NF++  H T     ++ ++ +T++E+   WD  + +V DEN    QL +V
Sbjct: 166 NFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQLV 215


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 301  EFSSWTTVRISSQSTLTSLEVL 366
            EF  W T +ISS     +LE L
Sbjct: 1406 EFGDWDTAQISSTVQKYTLENL 1427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,220
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)