Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0208
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    42   6e-05
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    37   0.002
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    29   0.36 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.36 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.9  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   7.8  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
 Frame = +3

Query: 237 PLIIAHRGAS-GYV-------PEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNEL 392
           PL+IAHRG    YV       PE+T+ ++  ++  GAD +E D+ +TKD V+   HD  L
Sbjct: 32  PLVIAHRGKCLTYVYRYKAKYPENTILAFQQAVKAGADCVETDVRLTKDEVVCILHDRNL 91

Query: 393 S 395
           +
Sbjct: 92  N 92


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +3

Query: 243 IIAHRGASGYVP--------EHTLGSYALSITMGADYIEPDLVMTKDGVLVARHD 383
           +I HRG     P        E+TL S+  +  +GA Y+E D+ MTKD V V  HD
Sbjct: 749 VIGHRGLGKNQPDRLSLQLGENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHD 803


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 30  SVNRYQ-LHRSV*FSDSSGFVCSLTDIWVSNMKIFGLLVLSFSTVGITFGIPVNENLDFN 206
           ++N Y  L + +     +GF CSLTD+W   +    L+       GIT+    N+     
Sbjct: 220 NLNYYNDLRKEIDQKKHAGFDCSLTDLWGRALS-RKLVDAERGGPGITYSSMRNQ----- 273

Query: 207 SEFLNSDFCSPLIIA 251
           S F N+D+  P+I+A
Sbjct: 274 SWFQNADYPYPIIVA 288


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 30  SVNRYQ-LHRSV*FSDSSGFVCSLTDIWVSNMKIFGLLVLSFSTVGITFGIPVNENLDFN 206
           ++N Y  L + +     +GF CSLTD+W   +    L+       GIT+    N+     
Sbjct: 220 NLNYYNDLRKEIDQKKHAGFDCSLTDLWGRALS-RKLVDAERGGPGITYSSMRNQ----- 273

Query: 207 SEFLNSDFCSPLIIA 251
           S F N+D+  P+I+A
Sbjct: 274 SWFQNADYPYPIIVA 288


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 505  SASVKSSVNQPVIADPSTV*VRLRVANSIRLATSVVKLSSLSCRATSTPSFVITRSGS 332
            +ASV  S    V A  ST  V    +++I  A S   LSS +   +ST +   T S S
Sbjct: 1084 TASVTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSS 1141


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 IFGLLVLSFSTVGITFGIPVNENLDF 203
           I  LL + FS V + F +PV+ ++DF
Sbjct: 711 IHTLLKVIFSVVPLPFDVPVDNSVDF 736


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 422 NTTCDVGCQTQFVVMSGHKYPVFR 351
           +T CDV   + FVV    +YP  R
Sbjct: 53  DTVCDVSSNSTFVVKCNRQYPCTR 76


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 420 YDLRRRLSNSVRCHVGPQVPRLSS--LPDQVRCNQLPWL 310
           YD  R+L+ S+R     + PRLSS  LP Q+R   L W+
Sbjct: 193 YDCARKLAKSLRFANVSRDPRLSSELLPFQMRV--LEWM 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,009
Number of Sequences: 5004
Number of extensions: 55427
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)