Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0208
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            31   0.66 
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       30   1.2  
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  29   2.0  
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 237 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDN 386
           PL+I HRG      E+TL  +   +   AD  E D+ +TKD  LV  HD+
Sbjct: 46  PLVIGHRGNPVRYQENTLEGFTSLLGTNADGFELDIYLTKDEELVCFHDD 95


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 279 EHTLGSYALSI-TMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRIEFATRNRTQTV 455
           E TLG+  LS  T     ++PD  +TK G++   HD  L+      S IE +  N+T  +
Sbjct: 183 ESTLGAKKLSSDTTSISALKPDAGITKTGIVPPGHDTVLN-----GSEIELSELNKTAVI 237

Query: 456 DGSAITGW-FTE-DFTLAEIK 512
           + +    + FT+   TL+ IK
Sbjct: 238 NHTTPRAFQFTDVSQTLSAIK 258


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 206  IEIKVLIYWNSKSDPHGAKGKHQQPEDFHIANPNIRERTH 87
            ++  V   W S   PH AK  HQQ  ++   +P  + + H
Sbjct: 986  VDTAVRTLWRSVVVPHSAKDTHQQIPEYRRGSPRRQRKNH 1025


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +3

Query: 300 ALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASR 419
           ++ ++ G  ++E D+ +TKD V V  HD+ + L+ + +++
Sbjct: 254 SIRLSQGVHFVEFDVHVTKDHVPVVFHDDTVKLSVETSNQ 293


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 173 KSDPHGAK-GKHQQPEDFHIANPNIRERTHKPTTVTKLNR 57
           +  PH ++   H+Q E    A  N R RTHK T   KL R
Sbjct: 599 EQSPHKSETSAHKQTERSKQAQDNTRSRTHKFTPKNKLKR 638


>SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 239 TNHCPPRSQRICPRTHPRFLCSQYNH 316
           T  C   S++I P  HP +LC+Q +H
Sbjct: 162 TAFCSGESEKIDPPIHPVYLCTQGSH 187


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -3

Query: 553 PALISGMRSLARNVFISASVKSSVNQPVIAD---PSTV*VRLRVANSIRLATSVVKLSSL 383
           P+ ++ M +L  +V ++ S+ S+   P I+    P    V +   N+ R+ATSV+ LSSL
Sbjct: 731 PSYVANMTTLDSSVSLTRSLLSTTLIPSISTSILPYNTTV-IATPNTTRIATSVILLSSL 789

Query: 382 S 380
           +
Sbjct: 790 N 790


>SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = -3

Query: 208 ELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTNPLLSLN*TDLCSWYRLTD 29
           E K+R  + G+ KV P +L ES  +   F L  ++S       L +LN   LC WYR + 
Sbjct: 116 EFKNRAKYGGLIKVQP-MLCESGIAATDFKL--ELSGIARLPSLPALNKFTLCMWYRTSR 172

Query: 28  IS 23
           +S
Sbjct: 173 LS 174


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 4   QEFGTRARYLSIDTSYTDLFSLVTVVGLCVLSRIFGLAI*KSSGCWCFPLAPWGS 168
           Q+FG + R L+   S  D    V+ +  CV   + G       G W  PL   GS
Sbjct: 43  QKFGGKLRALASSGSREDFIGAVSEINRCVFEFVTGRGGASQEGSW--PLIQCGS 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,938
Number of Sequences: 59808
Number of extensions: 423100
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)