Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0208
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.6  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 235 EQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           EQKS +KN     ++  T   +    + +E +  PKI   L+  ++  + N
Sbjct: 268 EQKS-YKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNN 317


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 122 HIANPNIRERTHKPTTVTKLNRSV*LVSIDR 30
           H+   N   R H+   V ++NR   +  IDR
Sbjct: 362 HLPQSNKMNRMHRMNRVNRVNRMDRMDRIDR 392


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 195 LDFNS--EFLNSDFCSPLIIAHRGASGYVPEHTLGS 296
           L +NS  E  +  + + +++ H G+  YVP    GS
Sbjct: 74  LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGS 109


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/58 (18%), Positives = 24/58 (41%)
 Frame = -3

Query: 256 RWAMISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           R++     +K  +KN     ++  T   +      +E +  PKI   L+  ++  + N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/58 (18%), Positives = 24/58 (41%)
 Frame = -3

Query: 256 RWAMISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           R++     +K  +KN     ++  T   +      +E +  PKI   L+  ++  + N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/58 (18%), Positives = 24/58 (41%)
 Frame = -3

Query: 256 RWAMISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           R++     +K  +KN     ++  T   +      +E +  PKI   L+  ++  + N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/58 (18%), Positives = 24/58 (41%)
 Frame = -3

Query: 256 RWAMISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           R++     +K  +KN     ++  T   +      +E +  PKI   L+  ++  + N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/58 (18%), Positives = 24/58 (41%)
 Frame = -3

Query: 256 RWAMISGEQKSEFKNSELKSRFSFTGIPKVIPTVLKESTNSPKIFILLTQISVREHTN 83
           R++     +K  +KN     ++  T   +      +E +  PKI   L+  ++  + N
Sbjct: 271 RYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 328


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 99  TDIWVSNMKIFGLLVLSFSTVGITFGIPVNENLDFNSEFLNSD 227
           TD+WV  +K F  + + F     T G  +       S+ L  D
Sbjct: 155 TDVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNLEDD 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,869
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)