Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0207
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     29   1.2  
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    29   1.2  
07_01_0575 - 4259145-4261148                                           27   8.3  

>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 100  KYSRSRYK*CLQHLRKLSSNIL*NLTFIPITDSRIS*YRNHLVT*HFKKIS*LPKFIK 273
            ++S + YK  + HLRKL  N    L+ +PI     S    HL +     IS LP ++K
Sbjct: 1082 QWSEAEYKLLIPHLRKLGINACSKLSLLPIETLSSSVKELHLSS-CTSYISMLPAYLK 1138


>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 19  LWNNMIDSPIYKHNNFALTVKISI*LGKYSRSRYK*CLQHLRKLSSNIL 165
           L + +ID+  ++ N   L  ++   +  +  SRY  CL+HL KL +N+L
Sbjct: 274 LKSKVIDNSNFR-NFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLL 321


>07_01_0575 - 4259145-4261148
          Length = 667

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 344 IYNLQLILRC*VFLLLRCTNYALIFINLGNYEIFLKC 234
           +Y   L+LR  + ++LRCT++A    +L  + +FL C
Sbjct: 253 LYTKALVLRTRIGMILRCTSHA---CSLLAFALFLTC 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,077,186
Number of Sequences: 37544
Number of extensions: 120808
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)