Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0207
         (427 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118835-1|AAM50695.1|  365|Drosophila melanogaster GM02889p pro...    29   3.4  
AE014297-2748|AAF55732.2|  386|Drosophila melanogaster CG4433-PA...    29   3.4  
AE014297-2747|AAS65179.1|  365|Drosophila melanogaster CG4433-PB...    29   3.4  

>AY118835-1|AAM50695.1|  365|Drosophila melanogaster GM02889p
           protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = -1

Query: 145 YVSVVNIICTCFLNTYLII 89
           Y+S+++++CTCF++T+  I
Sbjct: 291 YLSILDLLCTCFMSTHWCI 309


>AE014297-2748|AAF55732.2|  386|Drosophila melanogaster CG4433-PA,
           isoform A protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = -1

Query: 145 YVSVVNIICTCFLNTYLII 89
           Y+S+++++CTCF++T+  I
Sbjct: 312 YLSILDLLCTCFMSTHWCI 330


>AE014297-2747|AAS65179.1|  365|Drosophila melanogaster CG4433-PB,
           isoform B protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = -1

Query: 145 YVSVVNIICTCFLNTYLII 89
           Y+S+++++CTCF++T+  I
Sbjct: 291 YLSILDLLCTCFMSTHWCI 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,357
Number of Sequences: 53049
Number of extensions: 239046
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)