Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0207
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39470.1 68418.m04780 F-box family protein   ; similar to SKP...    26   9.3  
At1g64790.1 68414.m07346 translational activator family protein ...    26   9.3  

>At5g39470.1 68418.m04780 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 170

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 232 MSPSDFCINLFGCLLLV*TLNFIKCWKIVYVSVVNII 122
           +SPSD C  +F C  L   ++  K W + Y  VV ++
Sbjct: 111 LSPSDICDIIFCCKSLCALVDSEKTWLVQY-EVVKVV 146


>At1g64790.1 68414.m07346 translational activator family protein
           similar to HsGCN1 [Homo sapiens] GI:2282576
          Length = 2440

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 150 IFQHFMKFNVYTNNRQPNKLIQKSLGDITFQKNF 251
           IFQ    ++   + +  + LI K LG++TF K F
Sbjct: 52  IFQTLAIYDDRASRKAVDDLIVKGLGNVTFMKTF 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,217,062
Number of Sequences: 28952
Number of extensions: 116094
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)