Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   1.9  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   4.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    24   5.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    24   5.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   7.6  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    24   7.6  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  SFLFAKVQLCHRLYEASKTELDPNLHKNRLFL 164
           SF  AK  L H  Y    T LDPNL++  +FL
Sbjct: 788 SFFVAK-WLGHPSYFDDLTSLDPNLYEGLVFL 818


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 132 DPNLHKNRLFLIIHAAIGSGVFNNSTVTDPRPVHPLRVVRSAH 260
           + N+H +  F  IH+++ +  F+      P  ++P   + S H
Sbjct: 371 ESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSINPPSPLMSNH 413


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 147 KNRLFLIIHAAIGSGVFNNSTVTDPRPVH 233
           K +LFL  H++I + V+  +T+    P+H
Sbjct: 34  KVQLFLNEHSSILNAVYETTTIVYTEPLH 62


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 151 FLCKLGSSSVFEASYKR*QSCTFANRNDFSFSN---TSKINKYI*SHF 17
           FLCK G    ++ SY++ Q+         S +N    SKI K +  HF
Sbjct: 142 FLCKHGVIKTYKISYEQTQTLHAVFDKSLSHNNFQINSKILKDLTEHF 189


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 70  HFYSRRYNSVIVCTKLR 120
           +FY++RY+ VI   KLR
Sbjct: 107 YFYNKRYDMVITNNKLR 123


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 120 KTELDPNLHKNRLFLIIHAAIGSGVFNN 203
           +T+  P+L ++    ++  AI +G+FN+
Sbjct: 174 ETKYQPDLERHEAMELVKEAIEAGIFND 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,743
Number of Sequences: 5004
Number of extensions: 25725
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)