Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0205
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 29 1.3
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 29 1.3
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 5.2
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804... 26 9.1
04_04_0815 - 28269918-28270022,28270164-28270226,28270342-282704... 26 9.1
04_04_0193 + 23482177-23484963 26 9.1
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 26 9.1
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 26 9.1
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 206 GIIENAAADGGVDNQKQSIFMQVGVKFSFRSFVQTMTELYLRE 78
G+ E AADGG+D+ K+ + Q+ + F +T + E
Sbjct: 667 GLPEAVAADGGMDSDKEMLMSQMNFEKRFGQSAAFVTSTLMEE 709
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 204 STVTDPRPVHPLRVVRSAHGENFILNSHC 290
+ V+ PRP+H + + R G L+SHC
Sbjct: 373 TAVSAPRPIHGMAINRQQSGGTGSLDSHC 401
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 201 NSTVTDPRPVHPLRVVRSAHGENFILNSHCRLQCKS 308
+ T+T+ PV+PL ++R ++L QCK+
Sbjct: 2241 SGTMTNSSPVYPLHLLRDIETRVWLLAVESESQCKA 2276
>10_08_0636 +
19478723-19478869,19479984-19480212,19480321-19480414,
19480598-19480721,19480922-19481023,19481103-19481254,
19481353-19481446,19481642-19481827
Length = 375
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 236 RMYWSRISYCGIIENAAADGGVDNQKQSIFMQVGV 132
+++WS +Y + E A DG V+ ++ + VGV
Sbjct: 172 QLHWSTANYAPLQERALWDGLVEMYEKGLVRAVGV 206
>04_04_0815 -
28269918-28270022,28270164-28270226,28270342-28270460,
28270586-28270684,28270761-28270953,28271024-28271117,
28271339-28271394,28272372-28272431,28272877-28272989,
28273286-28273343,28273429-28273521,28273659-28273904,
28274990-28275371,28275523-28275595,28275692-28275795,
28275872-28275963,28275996-28276106,28276225-28276309,
28276385-28276518,28278264-28278302
Length = 772
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 219 PRPVHPLRVVRSAHGENFILNSHCRLQCKSY*FSEY-IMMW 338
P PV P + +R A G+ +LN + + Q ++ FS+ +++W
Sbjct: 77 PSPV-PSKFLRFAEGQRVLLNVNAKNQIEASLFSDLSVLVW 116
>04_04_0193 + 23482177-23484963
Length = 928
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 97 VIVCTKLRKLNLTPTCIK 150
V+ C++L+KLNL C+K
Sbjct: 880 VVRCSRLKKLNLVAGCLK 897
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 87 VQLCHRLYEASKTELDPNLHKNRLFLIIHAAIGSGVFN 200
V + HR A L +L+K RL L G G+FN
Sbjct: 531 VTIVHRTTGAGSNWLAQDLNKGRLDLFYWMIAGIGIFN 568
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 221 RISYCGIIENAAADGGVDNQKQSIFMQVGVKFSFRSFVQTMTELYLR 81
R + G++ +A G V + F+Q F + V T +YLR
Sbjct: 139 RAAAFGLLSGVSAAGFVSGTLTARFLQTSTTFQVAAAVAAATAIYLR 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,589,998
Number of Sequences: 37544
Number of extensions: 157533
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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