Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7251| Best HMM Match : GLTT (HMM E-Value=7.9)                       28   1.8  
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)                   27   4.1  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       26   7.1  
SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_7251| Best HMM Match : GLTT (HMM E-Value=7.9)
          Length = 139

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 18  KWL*MYLFILDVFEKLKSFLFAKVQLCHRLYEASKTELDPNLHKNRL 158
           +W+ + LF+L V    +SFLF +  L  + Y       DP  HK R+
Sbjct: 1   RWIFVCLFLLPVSVLYESFLFVRNWLAFKYYS------DPERHKERV 41


>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
          Length = 591

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 165 SETIYFYASWGQVQFSKLRTNDDRVVPSRIEM 70
           SETI  Y S    Q S+LR  + R++PS + M
Sbjct: 50  SETIEPYNSLSNSQPSRLRVAESRILPSLVGM 81


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 292 RQCELRMKFSPCADRTTLSGCTGRGSVTVELLKTPLPMAAWIIRNNL 152
           R  +L  + S C    +   CTG  S ++E +KT L   A  + +NL
Sbjct: 63  RSSDLTSRCSGCQCSQSKLDCTGSTSSSLEFIKTSLSSIADDVFHNL 109


>SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 63  LKSFLFAKVQLCHRLYEASKTELDPNLHKNRLFLIIHAAIGSGVFNNSTVTD 218
           LK  L     LC RL E+  T   PN     LF   + A    + NN  + +
Sbjct: 292 LKKALLCDAPLCLRLRESRVTPATPNTQPQILFRGKYYAYDRRLINNFVINN 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,609
Number of Sequences: 59808
Number of extensions: 188422
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)