Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81889-1|CAA57478.1| 1211|Homo sapiens p0071 protein protein.          28   6.8  
U60472-1|AAQ13346.1|  617|Homo sapiens catenin-4 protein.              28   6.8  
BC050308-1|AAH50308.1| 1149|Homo sapiens plakophilin 4 protein.        28   6.8  
AC005042-1|AAY62612.1| 1147|Homo sapiens unknown protein.              28   6.8  

>X81889-1|CAA57478.1| 1211|Homo sapiens p0071 protein protein.
          Length = 1211

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 168 IHAAIGSGVFNNSTVTDPRPVHP 236
           +  ++GSG F + +VTDPRP++P
Sbjct: 237 LRTSLGSG-FGSPSVTDPRPLNP 258


>U60472-1|AAQ13346.1|  617|Homo sapiens catenin-4 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 168 IHAAIGSGVFNNSTVTDPRPVHP 236
           +  ++GSG F + +VTDPRP++P
Sbjct: 89  LRTSLGSG-FGSPSVTDPRPLNP 110


>BC050308-1|AAH50308.1| 1149|Homo sapiens plakophilin 4 protein.
          Length = 1149

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 168 IHAAIGSGVFNNSTVTDPRPVHP 236
           +  ++GSG F + +VTDPRP++P
Sbjct: 237 LRTSLGSG-FGSPSVTDPRPLNP 258


>AC005042-1|AAY62612.1| 1147|Homo sapiens unknown protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 168 IHAAIGSGVFNNSTVTDPRPVHP 236
           +  ++GSG F + +VTDPRP++P
Sbjct: 193 LRTSLGSG-FGSPSVTDPRPLNP 214


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,642,648
Number of Sequences: 237096
Number of extensions: 826110
Number of successful extensions: 1875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)