Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-6|AAA62548.1|  316|Caenorhabditis elegans Hypothetical pr...    33   0.073
Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>U21323-6|AAA62548.1|  316|Caenorhabditis elegans Hypothetical
           protein C45G9.5 protein.
          Length = 316

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 165 IIHAAIGSGVFNNSTVTDPRPVHPLRVVRSAHGENFILNSH 287
           ++H +   G+ N+ T+TD   ++ ++     H  NFI+ +H
Sbjct: 105 VVHESFIEGLLNSMTITDSGDMYIVKQAEPGHRNNFIMTTH 145


>Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical
           protein F52D10.4 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 262 PCADRTTLSGCTGRGSVTVELLKTPL 185
           PC    TL  CT +G  + ++L+TPL
Sbjct: 161 PCTVEYTLEPCTYKGIDSQQMLETPL 186


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = +3

Query: 42  ILDVFEKLKSFLFAKVQLCHRLYEASKTELDPNLHKNRLFLIIHAAIGSGVFNNSTVTDP 221
           ILD  E     +  KVQL H  ++A   E  PNL K+ +  I  ++ G+GV +++     
Sbjct: 35  ILDNSELGYMSMIRKVQL-H--FDAEHEESHPNLPKHVVLKIACSSKGTGVLDSAGADMT 91

Query: 222 RPVHPLRVVRSAHGENFILNSHC 290
              H      SA+ E F+ N+ C
Sbjct: 92  ETDH------SANVELFMHNTEC 108


>U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical
           protein K10B3.5 protein.
          Length = 609

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 105 LYEASKTELDPNLHKNRLFLIIHAAIGSGV---FNNSTVTDPRPVHPLRVVRSAHGENFI 275
           L   SK +  P    NR+  I+     +G      +ST T PRPV+     +S+  +  +
Sbjct: 538 LQSPSKKQFTPATFNNRVSYILKPGTKAGTTVRLISSTKTQPRPVNSGIAYQSSDVQPQL 597

Query: 276 LNS 284
           +NS
Sbjct: 598 MNS 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,577,143
Number of Sequences: 27780
Number of extensions: 141435
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)