Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 135 GQVQFSKLRTNDDRVVPSRIEMTSAFQIHLR 43
           G++Q+SKL+  D R V +   M  A   H++
Sbjct: 128 GRIQWSKLQVFDCRYVTTTSGMFEALCNHIK 158


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 121 FEASYKR*QSCTFANRNDFSFSNTSKINKYI 29
           F  S  R  SC  +    +S  NT +  +YI
Sbjct: 369 FNESENRRNSCLGSTETYYSKHNTQQFTQYI 399


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -1

Query: 241  LSGCTGRGSVTVELLKTPLPMAAWIIRNNLFLCKLGSSSVFEASY 107
            LS C         L+    P+   + + N ++    SSS F +S+
Sbjct: 918  LSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSF 962


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 90  QLCHRLYEASKTELDP 137
           Q  HRLY A  +  DP
Sbjct: 66  QAHHRLYPAFSSSCDP 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,092
Number of Sequences: 438
Number of extensions: 1789
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)