Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0205
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58390.1 68416.m06508 eukaryotic release factor 1 family prot...    27   2.5  
At3g03520.1 68416.m00351 phosphoesterase family protein low simi...    27   2.5  
At2g28270.1 68415.m03431 DC1 domain-containing protein contains ...    27   2.5  
At5g67140.1 68418.m08464 F-box family protein similar to unknown...    27   3.4  
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p...    26   7.7  
At5g41030.1 68418.m04987 TCP family transcription factor, putati...    26   7.7  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    26   7.7  

>At3g58390.1 68416.m06508 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 395

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 99  HRLYEASKTELDPNLHKNRLFLIIHAAIGSGVFNNSTVTDPRPVHPLRVVRSA 257
           H L EA + +L P L     F+++H   G     +  + DP  ++ ++  ++A
Sbjct: 237 HLLLEAERRQLRPILENKSRFILVHTNSGYKHSLSEVLHDPNVMNMIKDTKAA 289


>At3g03520.1 68416.m00351 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 523

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 57  EKLKSF--LFAKVQLCHRLYEASKTELDPNLHKNRLFLIIHAAIGSGVFNNSTVT 215
           EKL  F  L  +  +C R + +  +   PN    RL+  +HAA  +G F+N T T
Sbjct: 132 EKLPVFKELVQEFAVCDRWFSSLPSSTQPN----RLY--VHAATSNGAFSNDTNT 180


>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 248

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 180 IGSGVFNNSTVTDPRPVHPLRVVRSAHGENFILNSHC 290
           +GSG  N  +V  P   HPLRV  S   E+ I+ S C
Sbjct: 1   MGSGKTNRPSVRHPSHNHPLRVFNSKE-EDEIICSGC 36


>At5g67140.1 68418.m08464 F-box family protein similar to unknown
           protein (dbj|BAA78736.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 228

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 CTKLRKLNLTPTCIKIDCF*LSTPPSAAAFSIIPQ*LILD 225
           C KL  +NL  T + +DCF ++    + A  I P  L+L+
Sbjct: 179 CRKLESINLWGTRVPVDCF-IALLTISPALQIKPMELLLN 217


>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
           putative similar to laccase LAC2-4, Liriodendron
           tulipifera, EMBL:LTU73106 [GI:1621467]
          Length = 577

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 183 GSGVFNNSTVTDPRPVHPLRVVRSAHGENFILN 281
           G G F+NSTV       P +  + AH    I N
Sbjct: 291 GQGTFDNSTVAGILEYEPPKQTKGAHSRTSIKN 323


>At5g41030.1 68418.m04987 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa] ; similar to unknown protein
           (emb|CAB61988.1)
          Length = 243

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 75  LFAKVQLCHRLYEASKTELDPN 140
           L A + +CH + EAS+T+++ N
Sbjct: 139 LTADLMICHSVEEASRTQMEAN 160


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 147 KNRLFLIIHAAIGSGVFNNSTVTDPR-----PVHPLRVVRSAHGENFILNSHCRLQ 299
           K ++ L +H  I  G F  + +   R        P+ +   AHG+ ++LN+H  LQ
Sbjct: 122 KGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQ 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,012,136
Number of Sequences: 28952
Number of extensions: 128152
Number of successful extensions: 290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)