Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0202
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8Q0H3 Cluster: DNA repair protein; n=3; Methanosarcina...    36   0.78 
UniRef50_Q8IC17 Cluster: Origin recognition complex subunit, put...    32   9.6  

>UniRef50_Q8Q0H3 Cluster: DNA repair protein; n=3;
           Methanosarcinaceae|Rep: DNA repair protein -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 900

 Score = 35.9 bits (79), Expect = 0.78
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +3

Query: 339 VEHYVRWSNLKPHIL-TTYIRAHK**INKII*KKSTYFIYYPDKQQAGKSNF 491
           ++H ++ +N+K HIL   Y    K  + +I  K+S Y IY PDK+++ +SN+
Sbjct: 53  IKHVLKENNIKFHILDNNYFETKK--LLEIEDKESNYLIYCPDKERSHESNW 102


>UniRef50_Q8IC17 Cluster: Origin recognition complex subunit,
           putative; n=4; Plasmodium|Rep: Origin recognition
           complex subunit, putative - Plasmodium falciparum
           (isolate 3D7)
          Length = 825

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 537 SHKLKYIDNYQTNTVNQSYILFKNNH 614
           S K KY+D Y++N  N  YI F  NH
Sbjct: 184 SFKNKYVDVYESNVSNNEYITFIKNH 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,579,580
Number of Sequences: 1657284
Number of extensions: 8175647
Number of successful extensions: 13905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13904
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)