Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0202
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    28   6.9  
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120...    28   6.9  

>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
            7097150-7097367,7097502-7097717,7097922-7098107,
            7098181-7098303,7098399-7098514,7099254-7099832,
            7101485-7101517,7102485-7103679,7103732-7103797,
            7104843-7104905,7105328-7105411
          Length = 1407

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 495  TIQVGRGIKYKWR*SHKLKYIDNYQTNTVNQSY 593
            TI++ RG++ ++   HKL+Y D+   +    SY
Sbjct: 924  TIEILRGLRERYEIHHKLRYTDDALISAAKLSY 956


>04_03_0784 -
           19610370-19611548,19611830-19611919,19612001-19612076,
           19612917-19613134,19613333-19613548,19613974-19614159,
           19614242-19614364,19614456-19614571,19615126-19615588
          Length = 888

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 495 TIQVGRGIKYKWR*SHKLKYIDNYQTNTVNQSY 593
           TIQ+ RG++ ++   HKL+Y D+        SY
Sbjct: 405 TIQILRGLRERYELHHKLRYTDDSLIAAAQLSY 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,929
Number of Sequences: 37544
Number of extensions: 202567
Number of successful extensions: 290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)