Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0201
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   6.2  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   8.3  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 501 LFSIRKKTRSIKHIVTLELNTALNGPSQ 584
           L   RK+T  + HI  ++LN  L+ PS+
Sbjct: 226 LDGFRKRTDGLVHISNIQLNGRLDHPSE 253


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 ILRSVGFDRVSVSKFSQIKPVSSPTRPHVAGIAP 366
           +L+S GFD+   S  S +    +    HVA ++P
Sbjct: 233 LLKSAGFDQAERSALSHLLEAHNTILDHVALVSP 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,115
Number of Sequences: 5004
Number of extensions: 43909
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)