Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0201
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640           28   4.8  
08_02_1398 + 26760069-26760267,26760349-26760635,26762394-267625...    27   8.5  

>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
          Length = 468

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 544 TMCLIDRVFLRIEKSCSCRILCG 476
           T     R  +RIE SC C+ LCG
Sbjct: 314 TSTTAQRAIIRIEHSCRCKDLCG 336


>08_02_1398 +
           26760069-26760267,26760349-26760635,26762394-26762591,
           26762819-26762845
          Length = 236

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 274 FAESSSGSKS--RPTEKIRRANQCAVSMGVMISLLSQRWKSSC 152
           F  SSSGS+S  RP   +RR       +G   S  S   +SSC
Sbjct: 177 FQRSSSGSRSPRRPDNDVRRTMPAVAELGRSPSPSSSSSQSSC 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,394
Number of Sequences: 37544
Number of extensions: 274551
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)