Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0201
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)                    28   5.0  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
          Length = 806

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 391 RKKSFHITLE*IEEDKKFHI*PSPRHSPIRTVSCNYSSFR 510
           R  +FH+ LE    D  F + P P +SPI TV  ++S  R
Sbjct: 59  RSATFHLPLE---GDLVFILNPGPENSPIPTVVSSHSKVR 95


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 36 RAEFLQPGDPLV 1
          R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,933
Number of Sequences: 59808
Number of extensions: 332833
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)