Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0200
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   8.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 283 YSAYFLLHRHFYYPHHQTRHLRCYCSNC 200
           +S Y+ L RHF   H Q+  L   C  C
Sbjct: 15  FSCYYSLKRHFQDKHEQSDTL-YVCEFC 41


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 74 FASFNFLSTKLGIKYTLVHH 15
          F  F+FL T+  ++ T  HH
Sbjct: 23 FVLFSFLRTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 74 FASFNFLSTKLGIKYTLVHH 15
          F  F+FL T+  ++ T  HH
Sbjct: 23 FVLFSFLRTRTKLQPTYFHH 42


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 448 TLSVKTEREEAQDKKIEEIEDEFNEL 525
           TL  K E      + +E +ED  NE+
Sbjct: 140 TLIGKNETSTQSSRSVESVEDFDNEI 165


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 448 TLSVKTEREEAQDKKIEEIEDEFNEL 525
           TL  K E      + +E +ED  NE+
Sbjct: 188 TLIGKNETSTQSSRSVESVEDFDNEI 213


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 86  FSVSVNWCKLFIVIALYRLV 145
           F+  + W   FIVI  Y ++
Sbjct: 404 FAAIIEWLSFFIVIFTYIII 423


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 448 TLSVKTEREEAQDKKIEEIEDEFNEL 525
           TL  K E      + +E +ED  NE+
Sbjct: 188 TLIGKNETSTQSSRSVESVEDFDNEI 213


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 448 TLSVKTEREEAQDKKIEEIEDEFNEL 525
           TL  K E      + +E +ED  NE+
Sbjct: 188 TLIGKNETSTQSSRSVESVEDFDNEI 213


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/49 (18%), Positives = 28/49 (57%)
 Frame = +1

Query: 391 EAENRAELEKERIALSKKLTLSVKTEREEAQDKKIEEIEDEFNELIDEE 537
           +A+ +A+ ++++    ++     + ++++ Q ++     D+FN  I+EE
Sbjct: 823 QAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEE 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,915
Number of Sequences: 438
Number of extensions: 2487
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)