Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0199
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    34   0.051
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    31   0.63 
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    30   0.83 
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    30   0.83 
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    29   1.4  
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi...    28   3.3  
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f...    28   3.3  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   4.4  
At4g32260.1 68417.m04590 ATP synthase family contains Pfam profi...    27   5.8  
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631...    27   5.8  
At1g64650.1 68414.m07329 expressed protein                             27   5.8  
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    27   5.8  
At5g17900.1 68418.m02099 expressed protein                             27   7.7  
At3g49310.1 68416.m05391 expressed protein contains PF05631: Pro...    27   7.7  
At1g72900.1 68414.m08432 disease resistance protein (TIR-NBS cla...    27   7.7  

>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 498 VRY-AKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENIPV 367
           +RY +K++FA+E+D     GK+ YDD  ++++    L + E + V
Sbjct: 761 IRYGSKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSV 805


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 474 ANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENI 373
           AN E AK+TKG+   ++ D +R RR    D E++
Sbjct: 47  ANGESAKKTKGRGFREEKDSDRQRRLSSRDFESL 80


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 498 VRY-AKKVFANEEDAKRTKGKVKYDDPDVER-VRRAHLNDLE 379
           ++Y +K++F+ E D     GK+ YDD  +E+ + R H++ +E
Sbjct: 687 IKYGSKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVE 728


>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 420 DVERVRRAHLNDLENIPVFWVLGALYLTT 334
           D ER++ A     ENIP+ W LGA  L T
Sbjct: 442 DDERIKYASKAGKENIPLDWALGAFILNT 470


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 420 DVERVRRAHLNDLENIPVFWVLGALYLTTA 331
           D ER++ A     E+IP+ W LGA  L TA
Sbjct: 450 DDERIKYASKAGEEDIPLDWALGAFILNTA 479


>At5g28650.1 68418.m03508 WRKY family transcription factor
           DNA-binding protein WRKY3, parsley, PIR:S72445
          Length = 330

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 295 HSKQQSCPGSLRCCCKIEC 351
           HS++ SC GSL+C  K +C
Sbjct: 216 HSRRTSCSGSLKCGSKSKC 234


>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 367

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 196 SNYERNTKGDASRRLR*WFYCVHNSVKYSSSC--VHSKQQSCPGSLRC 333
           S ++     DAS  L   F C+H S   SSS   V S   +C GS  C
Sbjct: 121 SFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDC 168


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 286 WTNTSHYCVRSKTITSTGARHRLWYS 209
           W N S YCV+S+T T   +  + +++
Sbjct: 113 WKNISRYCVKSRTSTQVASHAQKYFA 138


>At4g32260.1 68417.m04590 ATP synthase family contains Pfam profile:
           PF00430 ATP synthase B/B' CF(0); identical to cDNA
           chloroplast ATP synthase beta chain precursor (atpG)
           GI:5730140
          Length = 219

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 288 LCTLETAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSL 410
           L +L + + P + Q+    ++PQ PK+L  S D  S+ +SL
Sbjct: 13  LISLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSKALSL 53


>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 YCYKAVIKCVTTLKPMYTVIMKG 211
           YC   ++ C+T   P Y V+M G
Sbjct: 108 YCITYILSCITKHSPQYKVLMVG 130


>At1g64650.1 68414.m07329 expressed protein
          Length = 462

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 YCYKAVIKCVTTLKPMYTVIMKG 211
           YC   ++ C+T   P Y V+M G
Sbjct: 108 YCITYILSCITKHSPQYKVLMVG 130


>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
           domain-containing protein contains Pfam profiles
           PF00168: C2 domain; contains PF02893: GRAM domain;
           similar to Chain A, Crystal Structure Of Synaptotagmin
           Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
           III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 386 ISRTFQCFGCLGHSILQQHLRLPGQLCCFECTQLDE 279
           + R  +C  CL   +    L    Q+ CF+C QL E
Sbjct: 762 VKRERECVMCLSEEMSVIFLPCAHQVLCFKCNQLHE 797


>At5g17900.1 68418.m02099 expressed protein
          Length = 435

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 501 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLND 385
           R+R A+ ++  EE+++  + + + DD D    RR  + +
Sbjct: 96  RIRQAEIIYTEEEESRNQENRDEDDDEDALEERRRRIRE 134


>At3g49310.1 68416.m05391 expressed protein contains PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 YCYKAVIKCVTTLKPMYTVIMKG 211
           YC   ++ C+T   P Y V+M G
Sbjct: 108 YCIVYILSCITKHSPQYKVLMVG 130


>At1g72900.1 68414.m08432 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 172 NYFETHVHSNYERNTKGDASRR 237
           NYFE+H+H  +  N +G+ S +
Sbjct: 251 NYFESHLHKEFLDNIQGENSSK 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,765
Number of Sequences: 28952
Number of extensions: 222792
Number of successful extensions: 711
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)