Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0198
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 36 0.001
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 1.1
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 26 1.5
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 1.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 2.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 3.4
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 3.4
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 24 5.9
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 5.9
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 23 7.9
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 35.9 bits (79), Expect = 0.001
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 19 GALRSSGKRNPDYTSTYVFPNDF 87
G +R++G NP Y +TYVFPND+
Sbjct: 59 GNIRATGFENPKYETTYVFPNDY 81
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 62 PHTCSRMTSQRFS--RMCQSLQNRNTHCSNLHRPKERAGIS 178
PH+CS M Q S ++ L N N NL R GIS
Sbjct: 564 PHSCSTMFPQTLSLMQLLDCLLNPNMTLQNLVEEMVRLGIS 604
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 1.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 35 VESVTQTTHPHTCSRMTSQRFSRMCQSLQNRNT 133
++++ T HPHT +T Q + + + N++T
Sbjct: 209 IDAIGATAHPHTMLGVTKQGLAAITMTRGNKDT 241
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 1.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 197 SLYHWCLRYLHVPLAGAD 144
S W +RY++VPL G++
Sbjct: 434 SFNRWLIRYIYVPLGGSN 451
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 123 FWRLWHILEKRW 88
FWR WH RW
Sbjct: 427 FWRAWHRSFNRW 438
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 108 HILEKRWEVIREHVC 64
H + RW++I +HVC
Sbjct: 1254 HFQDTRWKIIYDHVC 1268
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 119 QNRNTHCSNLHRPKERAGISSTSGIARRSKGGHHAPGLSVERDA 250
++RN SN+ + +SS S R S P S +RD+
Sbjct: 839 RSRNNSISNVSHRERSNSVSSKSRETRTSASNESDPKKSTQRDS 882
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = +2
Query: 20 VLYGPVESVTQTTHPHTCSRMTSQRFSRMCQSLQNRNTHCSNL 148
+ YG ++ ++ H T + + + + +S +N +C+NL
Sbjct: 840 IAYGCLKYLSTINHSRTLFATHAHQLTNLTKSFKNVECYCTNL 882
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 20 VLYGPVESVTQTTHPHTCSRMTSQRFS 100
VLYG VES P T + ++FS
Sbjct: 227 VLYGRVESTPPAFLPETSEKQYKRKFS 253
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 86 SQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTS 187
S R S QSL + S+ HRP I++TS
Sbjct: 155 STRSSSHIQSLSPESKQTSDGHRPPSPTSITTTS 188
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 74 SRMTSQRFSRMCQSLQNRN 130
S +T+ +R+CQ NRN
Sbjct: 165 SSITANEIARLCQEANNRN 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,428
Number of Sequences: 5004
Number of extensions: 25899
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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