Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0198
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 31 0.18
03_06_0577 - 34842951-34843057,34843472-34843661,34843748-348438... 29 0.56
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 28 1.3
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 27 4.0
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 26 5.2
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 26 5.2
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 26 5.2
03_02_0745 - 10881781-10882096,10882172-10882386,10883243-10883413 26 5.2
02_03_0336 - 17888959-17889315 26 5.2
01_06_1222 - 35499069-35499287,35500319-35501734 26 5.2
06_03_1397 - 29861108-29861206,29861683-29861748,29862066-298621... 26 6.9
05_03_0371 + 13175939-13176688,13177367-13178629 26 6.9
04_03_0661 - 18468244-18469580,18469610-18469619 26 6.9
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 25 9.2
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 25 9.2
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010... 25 9.2
04_04_0101 - 22800360-22800653,22801088-22801249 25 9.2
03_05_0196 + 21849370-21850278,21850424-21851050 25 9.2
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 32 PVESVTQTTHPHTCSRMTSQRFSRMCQSLQN 124
P+ES+T+ CSR TSQ FS M + L+N
Sbjct: 355 PIESITKQDAAG-CSRSTSQNFSSMVEDLRN 384
>03_06_0577 -
34842951-34843057,34843472-34843661,34843748-34843829,
34844587-34844768
Length = 186
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 56 THPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPK 160
+ P C R + +F C SL+NRN S H+P+
Sbjct: 21 SRPDICKRNSHLKF---CYSLRNRNVFVSKTHKPR 52
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 254 IRRPFLRIAPGHDALPCSSSLYH 186
I +P R++P HD LP S +YH
Sbjct: 599 ILQPDKRLSPHHDLLPPDSGIYH 621
>05_01_0315 -
2468267-2468293,2469021-2469070,2469159-2469234,
2469498-2469575,2469967-2470048,2470146-2470238,
2470564-2470673,2470831-2470893,2471293-2471344,
2471421-2471545,2472681-2472794,2472917-2472961,
2473278-2473337,2474725-2474778,2474944-2474992,
2475071-2475252,2475349-2475404,2475491-2475584
Length = 469
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 200 SSLYHWCLRYLHVPLAGA 147
+S W +RYL++PL GA
Sbjct: 327 ASFNRWLVRYLYIPLGGA 344
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 48 PRLHIHIRVPE*LPSASRGCARASRTGTPIVPICTGQRNVQVSQ 179
PR +RVP+ ++ RA R TP V G+R+ Q Q
Sbjct: 606 PRPQFVVRVPQPQQQQNQQGTRAPRPPTPTVQPVQGRRDAQGQQ 649
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/67 (28%), Positives = 25/67 (37%)
Frame = +2
Query: 77 RMTSQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTSGIARRSKGGHHAPGLSVERDAEW 256
RMT S R HC H ++ A + R KGG G S + W
Sbjct: 543 RMTVSAAEATGCSYSQRRRHCCWWH--EQEAEAMPRAAATRAGKGGGGRTGGSDDGGGNW 600
Query: 257 LIKQKIA 277
++QK A
Sbjct: 601 HMRQKSA 607
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 154 PVQIGTMGVPVLEALAHPREALGSHSGTRMW 62
P G P A AHP ALG H W
Sbjct: 130 PTPFVLWGQPAAAAAAHPVAALGHHHHHHQW 160
>03_02_0745 - 10881781-10882096,10882172-10882386,10883243-10883413
Length = 233
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 68 TCSRMTSQRFSRMCQSLQNRNTHC 139
TC R S F + CQSLQ C
Sbjct: 176 TCQRWGSPEFKQYCQSLQRIADRC 199
>02_03_0336 - 17888959-17889315
Length = 118
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 199 EEQGRASCPGAIRRKGRRMAHK 264
EE+G+ P AIR+KGRR H+
Sbjct: 24 EEEGQHRAP-AIRKKGRRRQHQ 44
>01_06_1222 - 35499069-35499287,35500319-35501734
Length = 544
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 187 WYSEEEQGRASCPGAIRRKGRRMAHKTKNCW 279
WYS +E+G+ + ++GR +K W
Sbjct: 335 WYSGDEEGKGGIYNFVTKRGRCKGRGSKISW 365
>06_03_1397 -
29861108-29861206,29861683-29861748,29862066-29862155,
29862604-29862652,29862820-29862950,29863989-29864087,
29864169-29864204,29864467-29864557,29864814-29864994,
29865063-29865150,29865222-29865335
Length = 347
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 108 ARASRTGTPIVPICTGQRNVQVSQAPVV*RGG 203
A AS +G P+ P+ Q N +SQA + R G
Sbjct: 9 ALASTSGAPLAPLVAAQLNFVLSQANLPIRVG 40
>05_03_0371 + 13175939-13176688,13177367-13178629
Length = 670
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 35 VESVTQTTHPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTSGIA 196
V+SV +H T + + Q++SRM N+ T + + P S G+A
Sbjct: 526 VDSVKSWSHGETPTPLR-QKYSRMSSLFNNKRTMAARIGSPSPSMKKSFADGLA 578
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 25.8 bits (54), Expect = 6.9
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 71 CSRMTSQRFSRMCQSLQNRNT 133
CS + +R ++C S++N++T
Sbjct: 178 CSSLDMERLKKLCDSMENKDT 198
>10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 41 SVTQTTHPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTSGIARRSKGGHH 220
SV +T P+ ++ +S S+ CS RP+ +G+ +S + R K
Sbjct: 1227 SVRKTASPYNHPKVP---WSMDTSSVSGHGLECSTSVRPEMPSGLKVSSSVRRPKKRKFK 1283
Query: 221 APGL 232
AP L
Sbjct: 1284 APVL 1287
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 122 NRNTHCSNLHRPKERAGISSTSGIARRSKGGHHAPGLSVERDAEWLIKQKIAG*YLFLF 298
N ++ ++L+ E G R +G PG + ++D +WL G F F
Sbjct: 104 NDSSATASLNNSAELGGQDELDNGEGRGRGRGDGPGKAWQQDGDWLCPNTSCGNVNFAF 162
>04_04_1599 +
34700250-34700437,34700799-34700869,34701029-34701093,
34701193-34701273,34701328-34701408,34701632-34701651,
34701795-34701867
Length = 192
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 166 TFLWPVQIGTMGVPVLEALAHPREALGSHSGTRMWMCSLGYAFH 35
TFL P + M VL LAHP + + T +++ S G++ H
Sbjct: 37 TFLSPPRGDRMSRNVLLVLAHPDDESMFFAPTILFLKSKGHSIH 80
>04_04_0101 - 22800360-22800653,22801088-22801249
Length = 151
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +3
Query: 69 RVPE*LPSASRGCARASRTGTP------IVPICTGQRNVQVSQAPVV*RGGAREGIMPRG 230
R P LP S ASR+ P + P+CT ++ S P GG +G++ +
Sbjct: 68 RRPHRLPPKSSTGTVASRSVPPPGSLSTLPPVCTANLHLHRSIRPWPTNGGEMQGLVGKI 127
Query: 231 YP*KGTPNGS 260
KG P S
Sbjct: 128 REEKGEPQPS 137
>03_05_0196 + 21849370-21850278,21850424-21851050
Length = 511
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 251 RRPFLRIAPGHDALPCSSSLYHWCL-RYLHVP 159
R LR+ PG LP SL+H L RY +P
Sbjct: 30 RESALRLPPGPSQLPLIGSLHHLLLSRYGDLP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,582,987
Number of Sequences: 37544
Number of extensions: 194257
Number of successful extensions: 607
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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