Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0198
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   5.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 175 DTCTFLWPVQIGTMGV 128
           D+C  LW +  GT+G+
Sbjct: 136 DSCDRLWVLDTGTIGI 151


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 162 SFGRCRLEQWVFRFWRLWHILEKRWEVIREHVCGCVVWVTL 40
           +F  C +   V  F  ++ +LE RW    +    C VW +L
Sbjct: 88  AFADCLVGLVVMPFSAIYEVLENRWLFTTD---WCDVWRSL 125



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 214 ASCPGAIRRK 243
           A CPG +RR+
Sbjct: 407 ACCPGRVRRR 416


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 50  QTTHPHTCSRMTSQRFSRMC 109
           QT HP T   ++ +R S +C
Sbjct: 367 QTVHPETIIDVSRRRSSLIC 386


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +2

Query: 50   QTTHPHTCSRMTSQ--RFSRMCQSLQNRN 130
            Q  H  TC+ +TSQ  R S M   L   N
Sbjct: 1083 QPPHDTTCTTLTSQTIRISWMSPPLSAAN 1111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,651
Number of Sequences: 438
Number of extensions: 2166
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)