Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0198
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13674.1 68416.m01725 expressed protein                             31   0.12 
At5g35760.1 68418.m04284 expressed protein ; expression supporte...    29   0.48 
At5g47580.1 68418.m05873 expressed protein strong similarity to ...    27   1.9  
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (...    26   5.9  
At2g24800.1 68415.m02967 peroxidase, putative similar to peroxid...    26   5.9  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    25   7.8  

>At3g13674.1 68416.m01725 expressed protein
          Length = 76

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 86  SQRFSRMCQSLQNRNTHCSNLHRP-KERAGISSTSGIARRSKGG 214
           S R   +CQ+L N+N + S+L  P K  +  S+TS    RS  G
Sbjct: 11  SSRLKSLCQNLSNKNANVSSLPSPIKSASPSSATSCRLNRSSSG 54


>At5g35760.1 68418.m04284 expressed protein ; expression supported
           by MPSS
          Length = 177

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 65  HTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTSGIARRSKGG 214
           H  +++     S  C++++ ++  C     P +  G SST G+A +S+ G
Sbjct: 118 HLFAKLMKPLSSFSCKAIRLKSRRCGGEKLPPDTNGKSSTCGVAMQSRKG 167


>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 172 YLKHQWYSEEEQGRASCPGAIRRKGRRMAHKTKNCWIIFIFILSDY 309
           Y  H W+SE++Q   S      R+ R+ AH  K  WI+ + I+  Y
Sbjct: 321 YWTH-WFSEKKQHPLSLWILKERRYRKTAHNAKR-WILDVCIVIQY 364


>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
           (GATA-3) identical to GATA-binding transcription factor
           GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
           identical to cDNA for GATA transcription factor 3
           GI:2959733
          Length = 269

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +2

Query: 2   TIRSELVLYGP-VESVTQTTHPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPKERAG 172
           T RS   L G  V  +  T H H  +    ++        Q R +HC   + P+ R G
Sbjct: 139 TKRSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTG 196


>At2g24800.1 68415.m02967 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781338|emb|CAA71496
          Length = 329

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 126 GTPIVPICTGQRNVQVSQA 182
           G P+VPI TG+R+ +VS A
Sbjct: 138 GGPVVPIPTGRRDGRVSMA 156


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 32   PVESVTQTTHP--HTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPKERAGISSTSGIARRS 205
            P E  T++T P   + SRM+    +    +          L RP+ R   S +S  ++R 
Sbjct: 1277 PAEKKTKSTSPTSSSLSRMSPGGTNSDKTTKHGSGEDKKILPRPRPRMKTSRSSESSKRD 1336

Query: 206  KGGHHAPGLS 235
            KGG + PG++
Sbjct: 1337 KGGIY-PGVN 1345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,621
Number of Sequences: 28952
Number of extensions: 144133
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)