Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0197
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    27   2.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.5  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   4.4  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    25   5.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    21   9.7  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 125 PSLMAAPDHEKKAIEWVQWLVKEEAYFESTSGV 223
           P+ M+APD+    ++W Q  + ++  F +  GV
Sbjct: 104 PTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGV 136


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 179 WLVKEEAYFESTSGV-TASFGEMLLLIAIHFHSGQLSAVGELVCATL 316
           WL+KE  YF   S +  A+F     L+ + F SG L  + EL   T+
Sbjct: 243 WLIKERHYFNQNSKLRCAAFHPTSNLLVVGFSSG-LFGIYELPSFTM 288


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 276 PEWKCMAISNNISPKDA-VTPEVLS 205
           P W     +N ISPKDA V P ++S
Sbjct: 339 PGWSAHEETNRISPKDANVLPSIVS 363


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 448 IAIEISCYRNF-DCMSCHNLLCKYFLCK 368
           ++I  +C R + DC+ CHN +  + L K
Sbjct: 10  VSIRTACCRRWIDCIECHNEIADHPLLK 37


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
 Frame = -2

Query: 333 TGTRIPSVAHTSSPTADSCPEWKCMAISNNISPKDAVTPEVLSK*ASSFTNHWTHSIAFF 154
           T + + S + TSS  A S      +A S+  S   A +    S  ASS TN  T +    
Sbjct: 115 TSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTS 174

Query: 153 S*SGAAIKDGHAK--------IIHRLNETNLTPAAPGGGFCVTSLSNQATSSS 19
           S + +++    A             LN T  +  A       T+ SN ATSSS
Sbjct: 175 SATSSSLSSTAASNSATSSSLASSSLNSTT-SATATSSSLSSTAASNSATSSS 226


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 532 IFNWHFVFRKCS 497
           IF+ HFV R+CS
Sbjct: 28  IFSCHFVPRRCS 39



 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 424 RNFDCMSCHNLLC 386
           R+  C+SCH++ C
Sbjct: 47  RSIRCLSCHSVGC 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,032
Number of Sequences: 5004
Number of extensions: 47710
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)