Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0197
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1) 152 2e-37
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 29 2.0
SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9) 29 2.6
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_17798| Best HMM Match : CBM_21 (HMM E-Value=2.4e-29) 28 4.5
SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 28 6.0
SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 28 6.0
SB_57219| Best HMM Match : F5_F8_type_C (HMM E-Value=7.1e-30) 27 7.9
>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
Length = 1156
Score = 152 bits (368), Expect = 2e-37
Identities = 75/145 (51%), Positives = 103/145 (71%)
Frame = +2
Query: 38 LLRLVTQKPPPGAAGVRFVSLSLCMILACPSLMAAPDHEKKAIEWVQWLVKEEAYFESTS 217
LL L+T PPP AAGVRFV + LC +LACP +++ P++E+ AI W++WL KEE+++E+ S
Sbjct: 450 LLSLITCHPPPSAAGVRFVVVGLCTLLACPHIVSTPENEQAAINWIKWLSKEESHYEAAS 509
Query: 218 GVTASFGEMLLLIAIHFHSGQLSAVGELVCATLGMRVPVRPNGLARIKQAFTQEIFTEQV 397
G+ ASFGE+LLLI+IHFH QL +V ELV + LGMR VRP L+R+K FTQE+F E+
Sbjct: 510 GMHASFGEVLLLISIHFHGNQLESVAELVSSILGMR--VRPGSLSRMKALFTQELFPEKD 567
Query: 398 VTAHAVKVPVTANLNSNIPGYLPVH 472
+ VT L+S IPG + +
Sbjct: 568 WVYKQLCTCVTP-LHSLIPGLVEAY 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 503 FSKHKVPIKNWIYRQICNC 559
F++ P K+W+Y+Q+C C
Sbjct: 558 FTQELFPEKDWVYKQLCTC 576
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +2
Query: 305 CATLGMRVPVRPNGL---ARIKQAFTQE-IFTEQVVTAHAVKVPVTANLNSNIPGYLPVH 472
C T+ +RVPV N L R+ TQE + Q V K + S+ PG+L +
Sbjct: 1816 CCTMLVRVPVNNNALHAALRLCLRITQEHKYATQFVNLGGPKAIMGLTQKSSFPGFLSIT 1875
Query: 473 --CIHQLLKSRAFSKHKV 520
+H +L+ +H V
Sbjct: 1876 TLLLHHVLEDTVNFQHTV 1893
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 320 MRVPVRPNGLARIKQAFTQEIFTEQVVTAHAVKVPVTANLNSNIPGYL 463
+++P+R G R +F++EI++ VVT +P+ +L+S G++
Sbjct: 657 VKLPIR--GKQRSSSSFSEEIYSTHVVTEEVHHLPLWKSLSSEPEGHV 702
>SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9)
Length = 308
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 418 FDCMSCHNLLCKYFLCKGLFYSSQPIRSYWN 326
F+C C + L + +C+G+ + P+ + W+
Sbjct: 252 FECNPCTSTLVQLIICEGVAFEGDPLINMWD 282
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 418 FDCMSCHNLLCKYFLCKGLFYSSQPIRSYWNTHTKCCTH*FTY 290
F C+ C LL + LF +P+R N H +CC TY
Sbjct: 1083 FGCVGCFRLLFPHANEANLFL--KPMREKRNIHEECCKEGCTY 1123
>SB_17798| Best HMM Match : CBM_21 (HMM E-Value=2.4e-29)
Length = 207
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 317 GMRVPVRPNGLARIKQAFTQEIFTEQVVTAHA 412
G + P PN LAR K F + + + +++T H+
Sbjct: 28 GEKSPTSPNSLARRKVQFAENLVSIKMITPHS 59
>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 536
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 119 ACPSLMAAPDHEKKAIEWVQWLVKEEAYFESTSGVT 226
ACPSLM +P+ I + W++ + F+ TS +T
Sbjct: 117 ACPSLMGSPEQAIHGIAEITWVLTKTG-FKVTSELT 151
>SB_16585| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 387
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 119 ACPSLMAAPDHEKKAIEWVQWLVKEEAYFESTSGVT 226
ACPSLM +P+ I + W++ + F+ TS +T
Sbjct: 18 ACPSLMGSPEQAIHGIAEITWVLTKTG-FKVTSELT 52
>SB_57219| Best HMM Match : F5_F8_type_C (HMM E-Value=7.1e-30)
Length = 265
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 348 SPLGLTGTRIPSVAHTSSPTADS 280
+PLG+T IP+ A TSS ADS
Sbjct: 4 TPLGMTNGTIPNSALTSSTMADS 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,311
Number of Sequences: 59808
Number of extensions: 368595
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -