Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0197
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    32   0.25 
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    31   0.75 
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    29   1.7  
Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 28/94 (29%), Positives = 41/94 (43%)
 Frame = -2

Query: 339  GLTGTRIPSVAHTSSPTADSCPEWKCMAISNNISPKDAVTPEVLSK*ASSFTNHWTHSIA 160
            GL+     S A    P+A   P+       N   P D+ T   L+  A+S T+    S+A
Sbjct: 758  GLSAKPAVSSAPVEKPSAPEVPKTAGSLFGNIAKPADSATTSFLAPGAASSTS----SLA 813

Query: 159  FFS*SGAAIKDGHAKIIHRLNETNLTPAAPGGGF 58
                +G+++  G    I  LN+TN T  A  G F
Sbjct: 814  --PTAGSSLFGGSTGSIFNLNKTNTTETAKPGLF 845


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 421  NFDCMSCHNLLCKYFLCKGLFYSSQPIRSYWNTHTKCCTH*FTYCR*LSGMEMYGNQQQH 242
            N+ C +     C   L +G+   SQ  R YWN  ++CC   F+YC    G +  G Q   
Sbjct: 881  NYCCKALGGDPCGQPLDRGVG-GSQLSRWYWNQQSQCCLP-FSYC----GQK--GTQNNF 932

Query: 241  LTKR-CSNT 218
            LTK+ C  T
Sbjct: 933  LTKQDCDRT 941


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 352 SQPIRSYWNTHTKCCTH*FTYCR*LSGMEMYGNQQQHLTKR-CSNT 218
           SQ  R YWN  ++CC   F+YC    G +  G Q   LTK+ C  T
Sbjct: 485 SQLSRWYWNQQSQCCLP-FSYC----GQK--GTQNNFLTKQDCDRT 523


>Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical
           protein F38B7.7 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 448 IAIEISCYRNFDCMSCHNLLCKYFLCKGLFYSSQPIRSYWNTH 320
           +A+ +  Y N  C     L+CK+ LC+ LF  S  I  Y N+H
Sbjct: 118 VAMFLPTYYNKICGIKTTLVCKFLLCE-LFILSFLILGYSNSH 159


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 481  MDTMNWQISWNIAIEISCYRNFDCMSCHNLLCKYFL 374
            +++MN      +A  I    + DC+  H  LC+YFL
Sbjct: 1029 INSMNTSDDHTVAHAICQTLSIDCIQLHTSLCEYFL 1064


>Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical
           protein F59A1.11a protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 380 IFTEQVVTAHAVKVPVTANLNSNIPGYLPVHCIHQLLKSRAFSKHKVP 523
           +F E V   HA K  +   L  +    + +   H+L+ SR F   K P
Sbjct: 250 VFGEDVYQLHAAKYTIVVCLGHHRMVLISLRSTHRLVYSRIFQSTKPP 297


>Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical
           protein F28D9.2b protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 244 VVADCHTFPFRTTI 285
           V+A CHTFPF T I
Sbjct: 98  VIATCHTFPFVTAI 111


>Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical
           protein F28D9.2a protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 244 VVADCHTFPFRTTI 285
           V+A CHTFPF T I
Sbjct: 139 VIATCHTFPFVTAI 152


>AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical
           protein C17H12.12 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 2   IRHEVQDDEVAWLLRLVTQKPPPGAAGVRFVSLSLCMILACPSLMAAPDHEKKAIEWV-Q 178
           I H+V +  +  +  +   +  P    V+ + LS C I AC ++      +   I  V  
Sbjct: 186 IEHDVTNVTILCVNLIADYESSPKLTMVQLMRLSTCSIYACMAVRMPLKKKIPLIFMVCD 245

Query: 179 WLVKEEAYFESTSGVTAS 232
           WL++++   ++  G+  S
Sbjct: 246 WLIEKKPRLDTVIGIIQS 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,958
Number of Sequences: 27780
Number of extensions: 275863
Number of successful extensions: 749
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)