Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0197
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    29   2.1  
At3g13130.1 68416.m01643 hypothetical protein                          29   2.1  
At3g09922.1 68416.m01184 hypothetical protein no ATG start, anno...    29   2.8  
At2g35020.1 68415.m04296 UTP--glucose-1-phosphate uridylyltransf...    27   6.5  
At5g49320.1 68418.m06103 expressed protein                             27   8.6  
At3g13330.1 68416.m01678 expressed protein                             27   8.6  
At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containi...    27   8.6  

>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -1

Query: 418 FDCMSCHNLL---CKYF-LCKGLFYSSQPIR-SYWNTHTKCCTH*FTYCR*LSGMEMYGN 254
           + CMSC  +L   C Y  L K    S++     YW+   +C       CR LS    Y  
Sbjct: 417 YSCMSCSFILHESCAYLPLWKRHVVSNERHEYKYWDYFIRCSA-----CRLLSNGFRYET 471

Query: 253 QQQHLTKRCSNTRSAF 206
            Q  L  RC++T   F
Sbjct: 472 TQTSLDLRCASTTEPF 487


>At3g13130.1 68416.m01643 hypothetical protein
          Length = 201

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 424 RNFDCMSCHNLLCKYFLCKGLFYSSQPIRSYWNTHTK 314
           +N+  + C+ L+     C GL  SS+PI   W+   K
Sbjct: 47  KNYMFLLCNGLVVVVAKCSGLVASSKPIEKIWSNTDK 83


>At3g09922.1 68416.m01184 hypothetical protein no ATG start,
           annotated according to PMID:11123795;  IPS1 mRNA,
           complete sequence GI:8164007
          Length = 80

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 466 WQISWNIAIEISCYRNFDCMSCHNLLCKYFLCKGLFYS 353
           WQ S  + I   C  NF  +S  ++LC   LC G  +S
Sbjct: 25  WQASVPLGISRLCIFNFVILSLFSMLCFSSLCLGCTHS 62


>At2g35020.1 68415.m04296 UTP--glucose-1-phosphate
           uridylyltransferase family protein similar to SP|Q16222
           UDP-N-acetylhexosamine pyrophosphorylase (Antigen X)
           {Homo sapiens}; contains Pfam profile PF01704:
           UTP--glucose-1-phosphate uridylyltransferase
          Length = 502

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 31  SLVTKTSDTETSPRRCWSQICLIKSMYDFSMSILNGCSR 147
           S+ + T+      + CWS +CL     DF   + NG  +
Sbjct: 339 SMASATNQQTGRLQYCWSNVCLHMFTLDFLNQVANGLEK 377


>At5g49320.1 68418.m06103 expressed protein
          Length = 257

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
 Frame = +2

Query: 59  KPPPGAAGVRFVSLSLCMILACPSLMAAPDHEKKAI--EW------VQWLVKEEAYFEST 214
           K P     + FV L++ M+     L+ A       +  EW       + L  + A+F  +
Sbjct: 70  KTPLLCGAIAFVGLAVAMVGFHMYLLIAVTTSPSLVLVEWDPDSVPAKRLTFQAAFFFVS 129

Query: 215 SGVTASFGEMLLLIAIHFHSGQL 283
           + V    GE+LLL+A+   SG L
Sbjct: 130 TWVCFGVGEVLLLVALSVESGHL 152


>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 62  PPPGAAGVRFVSLSLCMILACPSLMAAPDHEKKAIEWVQWLVKEEAYFESTSGVTASFGE 241
           PPP A   +    S   ++ C   +  PD  +     ++W+   E +  + S ++     
Sbjct: 9   PPPVAEETKKEKESFARVVRCVKELHRPDDPESVYATLKWISVIELFVRAKSELSVEDVS 68

Query: 242 MLLLIAIH-FHSGQ 280
            L+ I +  FHS +
Sbjct: 69  ELVEIGLQIFHSSE 82


>At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +2

Query: 185 VKEEAYFESTSGVTASFGEMLLLIAIHFHSGQLSAVGELVCATLGMRVPVRPN 343
           ++ E Y   TS V     E + + ++ +HS +L+    L+    G  + V  N
Sbjct: 729 IEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKN 781


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,995
Number of Sequences: 28952
Number of extensions: 249923
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)