Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0196
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.85 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.5  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   3.4  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   4.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    25   6.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 118 LDGATCVCQLVTSIDRCRCNDNTNLLFRW 204
           LD ++  CQ +   DR R +  ++ LFRW
Sbjct: 776 LDESSVTCQKINDKDRVRFSGQSSSLFRW 804


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 94  RAHSITA*LITSYLYHHVPNNRLGYST 14
           R H I+   I   LYH VP+ + GY T
Sbjct: 647 REHLISRTQIQELLYHQVPSEKAGYHT 673


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 349 GGRAHSPPGVKWLLKPIDIYN 287
           GG  H P  V WLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 386 EIGFKFFFNCLNGWTS 339
           E G  F ++C+NGWTS
Sbjct: 270 ECGHIFCWSCINGWTS 285


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  IRCN*LSSYRVSPHSFTRPRR 118
           I C  LSS ++S H+F  PRR
Sbjct: 288 ISCRLLSSIQISYHAFDSPRR 308


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 233  NLSRTTHRYRHRNNKFVLSLQRHLSIEVTS*HTHVAPSSAWVA*NCEGSLYNCLVNYILS 54
            NL++T+ R  H  +  +    +  S  V S  T + P + W      G LY+C  + +LS
Sbjct: 1058 NLTQTSQRMFH--DALISGFFKIFSAAVVS-ATLLIPFALWAKNVFGGLLYSCNDDNVLS 1114

Query: 53   LSPC 42
             S C
Sbjct: 1115 ASQC 1118


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 LSIDVAVMIIQICYFGGGICVLSVKDFLRT*DL 253
           ++I VAVM+  IC  G  + +L +K   +  DL
Sbjct: 40  ITIPVAVMLFGICLIGTFVSLLMIKSSKKKSDL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,865
Number of Sequences: 5004
Number of extensions: 51163
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)