Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0196
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         28   6.3  
SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 91  PSQFHATQALD-GATCVCQLVTSIDRCRCND 180
           P   H  Q LD GATCV ++   +D  +C D
Sbjct: 430 PEYKHCKQKLDNGATCVSRVSPPVDGTKCGD 460


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 184  YYHYSDIYR*R*LVDTHTWRHLAPGSRETVRAHSIT-A*LITSYLYHHVPNN 32
            Y H +D      L D+ T+ HLA  S     A S T   L  S  Y H+P+N
Sbjct: 922  YEHLADSSTYEHLADSPTYAHLADNSTYEHLADSCTYEHLADSSTYEHLPDN 973


>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +1

Query: 121 DGATCVCQ--LVTSIDRCRCNDNTNLLF---RWRY 210
           +G  C C+  L+  ID C C DN  +     RW++
Sbjct: 130 NGTVCECRNGLIVCIDNCTCRDNGTVYHNGDRWKH 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,770
Number of Sequences: 59808
Number of extensions: 414458
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)