Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0196
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 139 CQLVTSIDRCRCNDNTNLLFRWRYL 213
           CQ VT I      ++  +++ W+Y+
Sbjct: 14  CQGVTDIHSRNLTNSLKVIYEWKYI 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 401 RVGSLRRPSGGNS 439
           RVGS RRPS  NS
Sbjct: 397 RVGSTRRPSRRNS 409


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 TCVCQLVTSIDRCRCNDNTNLLFRWRYLCVVRER 231
           +C+C    +       D+T +   W+Y+ +V +R
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDR 520


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 TCVCQLVTSIDRCRCNDNTNLLFRWRYLCVVRER 231
           +C+C    +       D+T +   W+Y+ +V +R
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDR 520


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 433 TAAGTPEGPNSPVQSVK*GSS 371
           TAA TP  P+ PV S   G++
Sbjct: 47  TAAATPTPPSVPVGSAVAGTA 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,553
Number of Sequences: 438
Number of extensions: 3497
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)