Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0195
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6... 29 2.2
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 29 2.2
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta... 28 3.8
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica... 28 3.8
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica... 28 3.8
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 27 6.7
At2g12940.1 68415.m01419 expressed protein 27 6.7
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 27 8.9
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 27 8.9
At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ... 27 8.9
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 8.9
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 27 8.9
>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
HD-ZIP transcription factor 6 identical to
homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
ATHB-6) (SP:P46668) [Arabidopsis thaliana]
Length = 311
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 118 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 219
D+ V+ T++ S+R FD+ R E +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 353 VTARLSSFALMSASILPKRSLLR-LSTTNYWSMPNTRRNL 469
VT+ S+ M + LPKR L L TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354
>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 702
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 100 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 207
IP++ D + F S+R + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293
>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 662
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 394 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 477
YTPEE+ + NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646
>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 665
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 394 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 477
YTPEE+ + NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 482 TDFVSDFSSCLAWTSNLLSTVLTTISSGVY 393
TDFVS + CL W LS+ I++ VY
Sbjct: 312 TDFVSKYLYCLWWGLRNLSSYGQNITTSVY 341
>At2g12940.1 68415.m01419 expressed protein
Length = 294
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 307 PSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKL 438
PS ++ +S L+ +GD +L FD + YT +E+ NKL
Sbjct: 101 PSPGNTPSSRLV--DGDQNASRLEFDANDYTDDELNKIAKSNKL 142
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 19 RFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 198
R CL + + R I +ADSGL NI ++ +++D +R EM ++ +E
Sbjct: 478 RLIACLFNHVKVRDIELLLADSGLDVNIALE----NLVDKSLIHVRND-HVEMHRLLQET 532
Query: 199 SK 204
+
Sbjct: 533 GR 534
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 19 RFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 198
R CL + + R I +ADSGL NI ++ +++D +R EM ++ +E
Sbjct: 439 RLIACLFNHVKVRDIELLLADSGLDVNIALE----NLVDKSLIHVRND-HVEMHRLLQET 493
Query: 199 SK 204
+
Sbjct: 494 GR 495
>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
heme protein, mitochondrial precursor (Clone PC13III)
[Solanum tuberosum] SWISS-PROT:P25076
Length = 307
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 254 QLARRHLHSTVTADSLLSPVTGIA*TRRSFKTRVTARLSSFALMSASI 397
QL RR LHS S+ +PV ++++ + +A L +FALM A I
Sbjct: 9 QLLRRKLHS----QSVATPVLSWLSSKKANEDAGSAGLRAFALMGAGI 52
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 74 WLTVVSREISPSSLAIFRLSIQNSQASESASMPK*GRWKKK 196
W T V E++P+ +I S +S +E ++ G W KK
Sbjct: 1359 WGTTVVDEVAPAFKSILEESHSSSSTTEEDTIESRGLWWKK 1399
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 139 EFSSIRERFDAEMRKMEEEMSKFRSELMNRES 234
E ++ER A ++K+EE +SK + +L+N+E+
Sbjct: 908 EKEELKERETAYLKKIEE-LSKVQEDLLNKEN 938
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,753,782
Number of Sequences: 28952
Number of extensions: 149884
Number of successful extensions: 536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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