Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0194
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   3.7  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   6.5  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   8.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.5  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 170 WVQRMALSCSRLHGNTSCLFVLSL 99
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 401 MSFSTTRTHPKAIKQKFRMWKQIKLNHLGNI 309
           + F    ++P A K + ++W+ + +N  GNI
Sbjct: 234 LGFWLASSYPNAYKWETQLWRTVGINLNGNI 264


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 160 GWRSPALAFTETLPV 116
           GW+SP+LA   TLP+
Sbjct: 30  GWKSPSLAEPFTLPI 44


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 444 VLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETN*IKSPRKHR 307
           V KG + + GT   +   +H N S S   +  + +   +KSP+  R
Sbjct: 446 VFKGQHEVAGTNSFEDPNSHFNVSNSSNHEEASPKKEVLKSPQFQR 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,931
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)