Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0194
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 1.6
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 2.9
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 2.9
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0) 28 3.8
SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0) 28 3.8
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 27 8.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 27 8.8
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 413 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNH 321
LP M T +T PK + Q FR +KQ++ H
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEH 70
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 147 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 40
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 152 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 238
AP+ P P AA R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 108 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 22
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 1025
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -1
Query: 504 NRTDKL--SLYFHTTHDSLVAFVLKGS---NYIMGTARIDVVFNHSNASESDQTKVQ 349
NRT +L ++Y H+ ++ VL+GS G I +VF HS+ + D+ ++
Sbjct: 896 NRTHELYNAIYSHSPDAKMLQMVLQGSIGTTVNQGPLEIAIVFLHSDTNADDEPDLE 952
>SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)
Length = 331
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -1
Query: 504 NRTDKL--SLYFHTTHDSLVAFVLKGS---NYIMGTARIDVVFNHSNASESDQTKVQ 349
NRT +L ++Y H+ ++ VL+GS G I +VF HS+ + D+ ++
Sbjct: 124 NRTHELYNAIYSHSPDAKMLQMVLQGSIGTTVNQGPLEIAIVFLHSDTNADDEPDLE 180
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 195 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 73
LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 176 PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 289
PVAA+ +T+++VPHT + T P C Q T L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 95 LPGSTQINRKCFREGESRRAPSAGPMLPVAAVTR 196
LPGS +R R+ R+PSA P+ A+TR
Sbjct: 649 LPGSMPSDRDLGRKNPQGRSPSAPPIPRAKALTR 682
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -1
Query: 186 AATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQP 28
AA MGP ++ S S + GS P GT P G+ SQP
Sbjct: 2935 AAPRHMGPITSSMATS-SPNQISIVSQNMGSVSSAPQGTHLGPPMSGTVMSQP 2986
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 108 VEPGSTPRCPSGTPSMSPQKGSPASQP 28
+ P +PR PS PS+SP + +S P
Sbjct: 813 LRPVPSPRTPSPMPSLSPLSSTDSSTP 839
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,032
Number of Sequences: 59808
Number of extensions: 341672
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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