Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0193
         (334 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q60SA6 Cluster: Putative uncharacterized protein CBG209...    31   6.7  
UniRef50_UPI00006CAA95 Cluster: zinc finger protein; n=1; Tetrah...    30   8.9  

>UniRef50_Q60SA6 Cluster: Putative uncharacterized protein CBG20970;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG20970 - Caenorhabditis
           briggsae
          Length = 196

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -1

Query: 193 VSLQLCSAQLLVRTSETHLMFMRLYNLISLLIQFCIYISMSLS 65
           V+++ C A L+VRT E H    R+Y + +LL+ FC  IS+ LS
Sbjct: 90  VAVERCFATLMVRTYEKH---PRVY-ISTLLLVFCHLISIFLS 128


>UniRef50_UPI00006CAA95 Cluster: zinc finger protein; n=1;
           Tetrahymena thermophila SB210|Rep: zinc finger protein -
           Tetrahymena thermophila SB210
          Length = 539

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 10  YFTCSVVCVCVYSIAFNINLMTLKYRYKIELIMR 111
           Y TCS+ C+C Y     IN++   +RY +E I +
Sbjct: 487 YKTCSI-CMCDYEEDEEINILDCMHRYHVECISK 519


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,768,324
Number of Sequences: 1657284
Number of extensions: 3190614
Number of successful extensions: 6576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6572
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)