Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0193
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   0.75 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   1.7  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   4.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   9.2  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 189 ETTVFNIFRNYLKQKPE 239
           +T V N FR YL+QKPE
Sbjct: 219 KTKVKNYFRTYLRQKPE 235


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 4   IVYFTCSVVCVCVYS 48
           +  F CS+VCVC +S
Sbjct: 154 LAIFFCSIVCVCTFS 168


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 DASPKFAQAAEQNTIVEKQPYLI 207
           D +PK A  AE   + EK+P+ +
Sbjct: 523 DEAPKAAPLAESKKVEEKEPFYV 545


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   IVYFTCSVVCVCVYSIAFNINLM 72
           IV+F  S+VCV  YSI    NL+
Sbjct: 452 IVHFFFSLVCVVYYSITPLRNLV 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,408
Number of Sequences: 5004
Number of extensions: 15280
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)