Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0193
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0032 + 343157-343507                                             27   4.9  
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    26   8.5  

>06_01_0032 + 343157-343507
          Length = 116

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  SVVCVCVYSIAFNINLMTLKYRYKIELIMRLNY 120
           + VCVC   +A N NL+ L     ++L + LNY
Sbjct: 75  AAVCVC---LAINANLLGLNLDVPVDLSLLLNY 104


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 211 KILNTVVSLQLCSAQLLVRTSETHLMFMRLYNLISLLI 98
           K  NT V L+ CS  L+   S T L  + + N+ +LLI
Sbjct: 568 KFGNTAVELRKCSTCLIKSLSATSLSDLDVTNVNNLLI 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,825,996
Number of Sequences: 37544
Number of extensions: 74717
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)